Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G16740 350 / 3e-113 ATTPS03 terpene synthase 03 (.1.2) AT2G24210 350 / 5e-113 AtTPS10 terpene synthase 10 (.1) AT3G25830 348 / 4e-112 ATTPS-CIN "terpene synthase-like sequence-1,8-cineole", terpene synthase-like sequence-1,8-cineole (.1) AT3G25820 348 / 4e-112 ATTPS-CIN "terpene synthase-like sequence-1,8-cineole", terpene synthase-like sequence-1,8-cineole (.1.2) AT3G25810 347 / 2e-111 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) AT4G16730 327 / 2e-104 AtTPS02 terpene synthase 02 (.1) AT1G61680 230 / 2e-67 ATTPS14 terpene synthase 14 (.1.2) AT1G70080 223 / 1e-64 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) AT1G33750 218 / 2e-62 AtTPS22 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) AT5G23960 210 / 3e-60 ATTPS21 terpene synthase 21 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006355 [exp] 933 / 0 AT2G24210 361 / 7e-117 terpene synthase 10 (.1) Lus10012312 [exp] 932 / 0 AT4G16740 363 / 3e-118 terpene synthase 03 (.1.2) Lus10033643 [exp] 450 / 5e-151 AT4G16730 356 / 2e-115 terpene synthase 02 (.1) Lus10025922 [exp] 425 / 1e-141 AT3G25810 353 / 3e-114 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Lus10038179 [exp] 421 / 3e-140 AT3G25810 351 / 2e-113 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Lus10001110 [exp] 414 / 6e-138 AT3G25810 362 / 1e-118 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Lus10018501 [exp] 365 / 3e-118 AT4G16740 413 / 1e-137 terpene synthase 03 (.1.2) Lus10039713 [exp] 354 / 5e-114 AT4G16740 409 / 4e-136 terpene synthase 03 (.1.2) Lus10018500 [exp] 348 / 4e-112 AT4G16740 419 / 1e-140 terpene synthase 03 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G041700 [exp] 407 / 9e-135 AT3G25810 432 / 3e-145 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Potri.007G118600 [exp] 402 / 5e-133 AT4G16740 462 / 3e-157 terpene synthase 03 (.1.2) Potri.019G023006 [exp] 389 / 5e-128 AT3G25830 540 / 0.0 "terpene synthase-like sequence-1,8-cineole", terpene synthase-like sequence-1,8-cineole (.1) Potri.019G023008 [exp] 386 / 3e-127 AT3G25830 535 / 0.0 "terpene synthase-like sequence-1,8-cineole", terpene synthase-like sequence-1,8-cineole (.1) Potri.019G022338 [exp] 367 / 2e-119 AT3G25830 483 / 8e-165 "terpene synthase-like sequence-1,8-cineole", terpene synthase-like sequence-1,8-cineole (.1) Potri.007G119700 [exp] 365 / 1e-117 AT4G16740 438 / 8e-147 terpene synthase 03 (.1.2) Potri.001G308300 [exp] 363 / 1e-117 AT3G25830 507 / 4e-174 "terpene synthase-like sequence-1,8-cineole", terpene synthase-like sequence-1,8-cineole (.1) Potri.001G308200 [exp] 362 / 1e-117 AT3G25810 499 / 4e-171 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Potri.011G031800 [exp] 329 / 5e-105 AT3G25830 382 / 5e-126 "terpene synthase-like sequence-1,8-cineole", terpene synthase-like sequence-1,8-cineole (.1) Potri.019G023020 [exp] 317 / 6e-103 AT3G25830 440 / 1e-151 "terpene synthase-like sequence-1,8-cineole", terpene synthase-like sequence-1,8-cineole (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01397 [flax] [poplar] Terpene_synth Terpene synthase, N-terminal domain CL0613 [flax] [poplar] Terp_synthase PF03936 [flax] [poplar] Terpene_synth_C Terpene synthase family, metal binding domain
Representative CDS sequence Show only first row Show all	>Lus10006356 pacid=23162659 polypeptide=Lus10006356 locus=Lus10006356.g ID=Lus10006356.BGIv1.0 annot-version=v1.0 ATGGCTGCTGCCGCCCAAGGTGCACCAATTATCCACAGTCATCTATATATAAGCAAGCACTTATCACCGGCGCTCCACAGTCACAAACGAACAAAAGCCA TAGGATTAGCCGCCGTACAGCAAAGCAGCTCCGGCAGCGGCTGTCGGAGAATCCATGCAGCGAGCCCAGAATCATCGACCCCTTCCGGAGGCGTTCATCG GCGATCCGGAAACTACGGTCCAAACATCTGGGAGTCCCATCAGTATTCCGGGGCAAGTCACGGTGACTCCAACTCTATACAACAAGAGAGAGCAGAAGAG CTGAAGAAGTACGTGAAACACAACTTGCTGAATATTATTGGTAATGGAGATCGAGGAGAGGAAGAAGATGTTGCAAAATGGGTTGAGACCATTGACAAAG TGCAAAGGTTGGGCATCGGCTACCATTTCGAGGACGAGATTCAGAGTGCTCTGGTGAAGTTGAGCTCTATGAAGCCGCCAAAGGGAAACCTACATGCTTG TGCCCTGTGGTTTAGGCTGCTCCGACAAGCTGGAATCTGGACATCTCCAGATATTGTGGAAGGGTTCAAGGATGATATTGATGGGACAAAGTTAAGGGCA GAAATGAGCACTGATACTGATGTGAGAGGGTTGATCAGTTTGTACGAGGCTTCATATCTGAGCATACCAGGTGAAACTGTTATGGATGATGCCAGAAACT ATGCTAGAGAACATCTACTTGATATCAAGATCAGTAGCAAGATGATGATGATGAGTCCCAAAGTAGCCAACCAATTGGATAGAACATTGAAGCTTCCTTC ACACTGGAGGACACAACGATCAGAGGCTAGGTGGCTCATTGAGCAATACCAAGAATCGAATACTGAAGACGACATTGATGCAGCCTTGCTTGAGTTGGCA ATCTTGGACTTCAATTTCGTCCAGCTTGTCTACCAATCTGATTTGCAGGACCTTAACAGATGGTGGAAAGAATTGGGTTTGCCAGAAAAACTGGAATTTG CAAGAGATAGGCTGACGGAGAGTTTTCAGTGGACAGTGGGTTTAAGCCCGGAGCCAAAGTTCAGCTACTGCAGGAAGACAGTGTCCAAGCTCACAGCTCT CATCAATGTCATTGACGATGTCTATGACGTTTATGGTTCCTTAGATGAACTCCACCTCTTCTCTTCCGCCATCCAACGGTGGGATGCGAATGAACTAGAG ATGCTTCCAAAGTACATGCAGATATGCTTCATGGCCGTCTACAACACCACAAATGAACTTGCCTACCACACCTTAAAACAACAGGATTTCAACTGCCTGC CTTACATTAAACAAGCGTGGCAACAGCAGTGTAGATTGTACCTGGAAGAAGCCAAGATGTTCCATACCGTTGGATCTCACCAAACATTCGATGAGTACTT GGAGAACGGTCAAAATACAATAGCATCACGCATTGTGTTGATCCACAGCTACGCTTCATCGGGTGATTCTCTCACAAAGGAAACATTTGATTACTTAGCT GACTACCCTGACCTAACTCGTTGGGTAGCCACCATTTGTCGTCTCACAAACGATTTAGCAACATCTAAGGCTGAATTAGAAAGGGGGGATATTCTCAAGT CTGTAAAATGTTACATGAAAGAAAAAGGTGTCACAGAAAAAGAAGCGCGTGAGTATATAGAATGGCGAATTGACGAAACATGGAAGAGATTGAACCAAGA TGTGATGTCTAACATCTATGGACGCATGGAAATGTATACAAAGCAGGTGGTGAATTTTGCCAGAGCATCCCATTTCATGTACCATGATGGGGATGCCCAC AGCAAGCCTACTCAACGTCATAAAGATCGAGCCATGGCCTTGCTTTATCACCCGTTCTCAATTCCTCTAACGGGGGACAATTAA
AA sequence Show only first row Show all	>Lus10006356 pacid=23162659 polypeptide=Lus10006356 locus=Lus10006356.g ID=Lus10006356.BGIv1.0 annot-version=v1.0 MAAAAQGAPIIHSHLYISKHLSPALHSHKRTKAIGLAAVQQSSSGSGCRRIHAASPESSTPSGGVHRRSGNYGPNIWESHQYSGASHGDSNSIQQERAEE LKKYVKHNLLNIIGNGDRGEEEDVAKWVETIDKVQRLGIGYHFEDEIQSALVKLSSMKPPKGNLHACALWFRLLRQAGIWTSPDIVEGFKDDIDGTKLRA EMSTDTDVRGLISLYEASYLSIPGETVMDDARNYAREHLLDIKISSKMMMMSPKVANQLDRTLKLPSHWRTQRSEARWLIEQYQESNTEDDIDAALLELA ILDFNFVQLVYQSDLQDLNRWWKELGLPEKLEFARDRLTESFQWTVGLSPEPKFSYCRKTVSKLTALINVIDDVYDVYGSLDELHLFSSAIQRWDANELE MLPKYMQICFMAVYNTTNELAYHTLKQQDFNCLPYIKQAWQQQCRLYLEEAKMFHTVGSHQTFDEYLENGQNTIASRIVLIHSYASSGDSLTKETFDYLA DYPDLTRWVATICRLTNDLATSKAELERGDILKSVKCYMKEKGVTEKEAREYIEWRIDETWKRLNQDVMSNIYGRMEMYTKQVVNFARASHFMYHDGDAH SKPTQRHKDRAMALLYHPFSIPLTGDN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G25820		ATTPS-CIN	"terpene synthase-like sequenc...		Lus10006356 [exp]	0	1
AT1G15330		AtPV42a	Cystathionine beta-synthase (C...		Lus10037342 [exp]	5.3	0.8427
AT5G42750		BKI1	BRI1 kinase inhibitor 1 (.1)		Lus10021736 [exp]	8.0	0.8525
AT1G53440			Leucine-rich repeat transmembr...		Lus10041937 [exp]	8.7	0.8166
AT4G36250		ALDH3F1	aldehyde dehydrogenase 3F1 (.1...		Lus10028357 [exp]	11.5	0.8359
AT3G28050			nodulin MtN21 /EamA-like trans...		Lus10039429 [exp]	15.2	0.8439
AT5G06060			NAD(P)-binding Rossmann-fold s...		Lus10040731 [exp]	15.8	0.7896
AT5G14410			unknown protein		Lus10022295 [exp]	16.1	0.8046
AT2G21370		XK1, XK-1	XYLULOSE KINASE 1, xylulose ki...		Lus10041956 [exp]	19.3	0.8448
AT1G11340			S-locus lectin protein kinase ...		Lus10013246 [exp]	20.0	0.7602
					Lus10001769 [exp]	20.9	0.8416

Compare expression of checked genes

Lus10006356 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.