Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G25330 65 / 5e-12 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012313 [exp] 271 / 6e-92 ND / Lus10012314 [exp] 118 / 1e-30 AT4G25330 104 / 5e-26 unknown protein Lus10006359 [exp] 76 / 1e-16 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G216900 [exp] 132 / 2e-35 AT4G25330 87 / 9e-20 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10006358 pacid=23162650 polypeptide=Lus10006358 locus=Lus10006358.g ID=Lus10006358.BGIv1.0 annot-version=v1.0 ATGTCTGCAAAGTACACAAAATCCGCCGTAAGTTACGACGTCGCCGGCGCCGGCTCTTCCACCGGTTACAATGTAGAGTTTCGATCCTTGTTCGACGACG CCTGGTACACCGTCCGCACAGTATCCGACGGCAAGAATCTGACGGTGAAGTATGAAGGCTTCGACGACGGCTCCGACGATCTCTTCGAGCCGTGCAGCTT CGTCAGTTTGGCTCAACTTGAGGAGTTCAGATCTAGATTCAGGCCGATTTCTAATCAGTTGCAGGACTCGGAGTGTAAGAAGCTGACTAGAGGAGTGGCG GTTTGCGTCTCCCATTCCTTTGACGGTAAGGACAACCTCTTCTACGACGGCGCAATCGACGATGTAGAAAGTAGTGGCGACGATACCGACTTTGGAGGAC CCTATGCTGTCCTGATAGACAATCTGGAGAAAGGCATATCCCCTGCAACAATAGAGCAGTTTATAAAGGAACAGACATCAGTTGTGGTTGAAGCACGTCC TTTGGGGAGTCCTTTTTATGGAACATCCATAAAGGCACTCATTAGTATTGACTCTGAGCAGAAGTATCAGCAGCTGCGCAACTTCCTACATTCTCCAAAT CATTTTGTCACCTCTTGGACCGGAAGGCCATTGGTGGTAACTAATAAAAGTTCTGGACTTGGTCCATATGTGATCCCAAGAAAATCAAGGTACCCAGAGA GCAAGTGGCAACATAGAAGTGATGTGAGGGATGAAGGGCATGGACTGAAGGTAGTGAGGAGGGGATCCGATGGATACAGAAGAGCAAAGCAGCTGAGGGA ATTGTTCATGGACTTCAATGAGCATCAGAAACTTATGTTCGAGTCATTGTCTCAGATGGAGGAAGAGATCAAGCAGCGATTTGTGTCCTGTGTAATGCAG CAAAGCAGTTTCCGTTGA
AA sequence Show only first row Show all	>Lus10006358 pacid=23162650 polypeptide=Lus10006358 locus=Lus10006358.g ID=Lus10006358.BGIv1.0 annot-version=v1.0 MSAKYTKSAVSYDVAGAGSSTGYNVEFRSLFDDAWYTVRTVSDGKNLTVKYEGFDDGSDDLFEPCSFVSLAQLEEFRSRFRPISNQLQDSECKKLTRGVA VCVSHSFDGKDNLFYDGAIDDVESSGDDTDFGGPYAVLIDNLEKGISPATIEQFIKEQTSVVVEARPLGSPFYGTSIKALISIDSEQKYQQLRNFLHSPN HFVTSWTGRPLVVTNKSSGLGPYVIPRKSRYPESKWQHRSDVRDEGHGLKVVRRGSDGYRRAKQLRELFMDFNEHQKLMFESLSQMEEEIKQRFVSCVMQ QSSFR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G25330			unknown protein		Lus10006358 [exp]	0	1
AT2G22590			UDP-Glycosyltransferase superf...		Lus10025711 [exp]	1.4	0.8762
AT3G12620			Protein phosphatase 2C family ...		Lus10019893 [exp]	3.0	0.8800
AT4G39150			DNAJ heat shock N-terminal dom...		Lus10041972 [exp]	3.9	0.8302
AT1G68910		WIT2	WPP domain-interacting protein...		Lus10029109 [exp]	6.9	0.8531
AT5G51780	bHLH	bHLH036	basic helix-loop-helix (bHLH) ...		Lus10031677 [exp]	9.5	0.8620
AT4G12520			Bifunctional inhibitor/lipid-t...		Lus10024625 [exp]	9.7	0.8533
AT4G02580			NADH-ubiquinone oxidoreductase...		Lus10014727 [exp]	12.5	0.8054
AT3G15115			unknown protein		Lus10013678 [exp]	15.2	0.8388
AT3G55360		ECR, CER10, ATT...	ENOYL-COA REDUCTASE, ECERIFERU...		Lus10001695 [exp]	18.3	0.8049
AT1G54730			Major facilitator superfamily ...		Lus10029963 [exp]	19.0	0.8262

Compare expression of checked genes

Lus10006358 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.