Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012314 [exp] 278 / 2e-94 AT4G25330 104 / 5e-26 unknown protein Lus10009776 [exp] 119 / 5e-35 ND / Lus10006358 [exp] 76 / 6e-17 AT4G25330 65 / 4e-12 unknown protein Lus10012313 [exp] 55 / 8e-10 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G216900 [exp] 84 / 2e-19 AT4G25330 87 / 9e-20 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10006359 pacid=23162657 polypeptide=Lus10006359 locus=Lus10006359.g ID=Lus10006359.BGIv1.0 annot-version=v1.0 ATGGCTAGTGAAGAGATACCTGGTGGTTGTTCTGAGGAAGAAGCTAGCCACGGTGATCATCAGTCTGCTTGTGGAACGCCACAGATCGAAGCATTGAAGG ACTTCATACACCAAGAAACATCTCTCTTGGTGAGAGTTCATATCTCACCAATTCTGTATCCTGAATCATTCGCCAGGGCAGTCGTTGTGGTGTGTTCAGA GAAGCAGCTAGAGTATCTATGCAAATTTCTAGACAGTCCCAATCACATTGTTCTCTCTGAGTCCGGAAGGCCCTTGGTTGTCACTGATAAAAACTTCAAC TTGGATACATTTGTGATGCCTATGGAGATTGCAAGCAACGTGCAGGGGCAGCAGGGTAGAAGTCTCGGTGCAAATTGTGGATTGAGAGTCGTCAAGGATG GATCGGTTGAATATGACGCTGCGAAGGAGATGAAGGATTTGTTCGTGGTGTTCGCAGACCATTAA
AA sequence Show only first row Show all	>Lus10006359 pacid=23162657 polypeptide=Lus10006359 locus=Lus10006359.g ID=Lus10006359.BGIv1.0 annot-version=v1.0 MASEEIPGGCSEEEASHGDHQSACGTPQIEALKDFIHQETSLLVRVHISPILYPESFARAVVVVCSEKQLEYLCKFLDSPNHIVLSESGRPLVVTDKNFN LDTFVMPMEIASNVQGQQGRSLGANCGLRVVKDGSVEYDAAKEMKDLFVVFADH

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10006359 [exp]	0	1
AT3G20580		COBL10	COBRA-like protein 10 precurso...		Lus10043065 [exp]	4.9	0.6875
					Lus10014189 [exp]	4.9	0.6414
AT1G08580			unknown protein		Lus10000388 [exp]	9.0	0.6384
					Lus10013881 [exp]	12.3	0.6282
AT1G18010			Major facilitator superfamily ...		Lus10009413 [exp]	18.1	0.6066
AT1G26730			EXS (ERD1/XPR1/SYG1) family pr...		Lus10004284 [exp]	18.8	0.6009
AT1G66350	GRAS	RGL1	RGA-like 1 (.1)		Lus10041128 [exp]	20.7	0.5945
AT1G09510			NAD(P)-binding Rossmann-fold s...		Lus10023097 [exp]	21.4	0.5800
AT1G22380		ATUGT85A3	UDP-glucosyl transferase 85A3 ...		Lus10013919 [exp]	24.7	0.5874
AT1G22400		ATUGT85A1, UGT8...	ARABIDOPSIS THALIANA UDP-GLUCO...		Lus10013920 [exp]	25.7	0.5803

Compare expression of checked genes

Lus10006359 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.