Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G48230 655 / 0 EMB1276, ACAT2 EMBRYO DEFECTIVE 1276, acetoacetyl-CoA thiolase 2 (.1.2) AT5G47720 629 / 0 Thiolase family protein (.1.2.3.4.5) AT5G48880 190 / 2e-56 PKT2, PKT1, KAT5 PEROXISOMAL-3-KETO-ACYL-COA THIOLASE 1, 3-KETO-ACYL-COENZYME A THIOLASE 5, peroxisomal 3-keto-acyl-CoA thiolase 2 (.1.2.3) AT2G33150 188 / 3e-55 PED1, KAT2, PKT3 PEROXISOME DEFECTIVE 1, 3-KETOACYL-COA THIOLASE 2, peroxisomal 3-ketoacyl-CoA thiolase 3 (.1) AT1G04710 185 / 3e-54 KAT1, PKT4 3-KETO-ACYL-COA THIOLASE 1, peroxisomal 3-ketoacyl-CoA thiolase 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012317 [exp] 739 / 0 AT3G07700 1051 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10039109 [exp] 622 / 0 AT5G47720 653 / 0.0 Thiolase family protein (.1.2.3.4.5) Lus10038749 [exp] 602 / 0 AT5G47720 663 / 0.0 Thiolase family protein (.1.2.3.4.5) Lus10011879 [exp] 189 / 1e-55 AT2G33150 725 / 0.0 PEROXISOME DEFECTIVE 1, 3-KETOACYL-COA THIOLASE 2, peroxisomal 3-ketoacyl-CoA thiolase 3 (.1) Lus10023672 [exp] 189 / 2e-55 AT2G33150 818 / 0.0 PEROXISOME DEFECTIVE 1, 3-KETOACYL-COA THIOLASE 2, peroxisomal 3-ketoacyl-CoA thiolase 3 (.1) Lus10022812 [exp] 186 / 5e-54 AT2G33150 702 / 0.0 PEROXISOME DEFECTIVE 1, 3-KETOACYL-COA THIOLASE 2, peroxisomal 3-ketoacyl-CoA thiolase 3 (.1) Lus10011748 [exp] 174 / 2e-49 AT2G33150 767 / 0.0 PEROXISOME DEFECTIVE 1, 3-KETOACYL-COA THIOLASE 2, peroxisomal 3-ketoacyl-CoA thiolase 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G168700 [exp] 672 / 0 AT5G48230 665 / 0.0 EMBRYO DEFECTIVE 1276, acetoacetyl-CoA thiolase 2 (.1.2) Potri.006G004400 [exp] 654 / 0 AT5G47720 653 / 0.0 Thiolase family protein (.1.2.3.4.5) Potri.001G051900 [exp] 191 / 3e-56 AT2G33150 780 / 0.0 PEROXISOME DEFECTIVE 1, 3-KETOACYL-COA THIOLASE 2, peroxisomal 3-ketoacyl-CoA thiolase 3 (.1) Potri.002G216400 [exp] 181 / 2e-52 AT2G33150 660 / 0.0 PEROXISOME DEFECTIVE 1, 3-KETOACYL-COA THIOLASE 2, peroxisomal 3-ketoacyl-CoA thiolase 3 (.1) Potri.001G051800 [exp] 177 / 3e-51 AT2G33150 673 / 0.0 PEROXISOME DEFECTIVE 1, 3-KETOACYL-COA THIOLASE 2, peroxisomal 3-ketoacyl-CoA thiolase 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0046 [flax] [poplar] Thiolase PF02803 [flax] [poplar] Thiolase_C Thiolase, C-terminal domain CL0046 [flax] [poplar] Thiolase PF00108 [flax] [poplar] Thiolase_N Thiolase, N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10006362 pacid=23162626 polypeptide=Lus10006362 locus=Lus10006362.g ID=Lus10006362.BGIv1.0 annot-version=v1.0 ATGGGTGGATTTCTGGGAACCTTGTCTTCTGTTCCTGCAACCAAGCTTGGATCTATAGCTATTGAAGCTGCTCTTAAGCGAGCCAATTTGGATCCATCCC TAGTACAGGAAGTTATCTTTGGTAATGTTCTGAGCGCGAATCTAGGACAGGCTCCAGCCAGGCAGGCGGCATTGGGCGCAGGAATTCCTAGCACAGTCAT CTGCACAACTGTCAACAAAGTTTGTGCTTCAGGGATGAAAGCAACTATGCTTGCGGCCCAGAGTATTCAGTTGGGCATCAACAATGTTGTTGTTGCTGGA GGCATGGAGAGCATGTCCAATGTACCTAAATATCTAGCGGAAGCAAGGAAGGGATCTCGGCTCGGACATGATTCACTTGTTGATGGGATGCTTAAGGACG GACTATGGGATGTTTATAATGATTTTGGCATGGGAAACTGTGCTGAAATATGTGCAGAACAGCACTCCATAACAAGGGAGCAGCAGGATGACTTTGCCGT TCAAAGTTTCGAGCGTGGCATTGCTGCACAGGACAGTGCTGCCTTTGCATGGGAAATAGTTCCGGTTGAGGTTTCAGGAGGGAGGGGAAAGCCGTCAACC CTTGTTGATAAAGATGAAGGTTTAGGGAAGTTTGATGCTGCTAAATTAAGGAAGCTCCGACCAAGTTTCAAACCAAATGGAGGAACTGTTACTGCAGGGA ATGCTTCTAGCATCAGTGACGGTGCAGCTGCTCTAGTTCTGGTGAGTGGAGAGAAGGCATTAGAGCTCGGGTTACACGTGATTGCAAAGATCACTGGATA TGCCGATGCTGCACAGGCACCAGAGCTTTTCACCACAGCTCCAGCTCTGGCCATACCGAAAGCTATTTCAAATGCTGGATTGGATGCTTCCCGAGTAGAT TATTACGAGATAAACGAAGCCTTTGCTGTTGTAGCCCTTGCTAATCAGAAGTTGCTGAGTCTTAATCCGGAAAAGATTAACGTACACGGCGGGGCAGTCT CTCTGGGGCATCCACTAGGATGCAGTGGCGCTCGGATCCTGGTAACGCTTTTGGGGGTGCTGAGGCAGAAGAATGCGAAATACGGTGTGGGCGGAGTATG CAATGGAGGAGGTGGAGCATCGGCACTGGTTGTGGAGCTTCTATAA
AA sequence Show only first row Show all	>Lus10006362 pacid=23162626 polypeptide=Lus10006362 locus=Lus10006362.g ID=Lus10006362.BGIv1.0 annot-version=v1.0 MGGFLGTLSSVPATKLGSIAIEAALKRANLDPSLVQEVIFGNVLSANLGQAPARQAALGAGIPSTVICTTVNKVCASGMKATMLAAQSIQLGINNVVVAG GMESMSNVPKYLAEARKGSRLGHDSLVDGMLKDGLWDVYNDFGMGNCAEICAEQHSITREQQDDFAVQSFERGIAAQDSAAFAWEIVPVEVSGGRGKPST LVDKDEGLGKFDAAKLRKLRPSFKPNGGTVTAGNASSISDGAAALVLVSGEKALELGLHVIAKITGYADAAQAPELFTTAPALAIPKAISNAGLDASRVD YYEINEAFAVVALANQKLLSLNPEKINVHGGAVSLGHPLGCSGARILVTLLGVLRQKNAKYGVGGVCNGGGGASALVVELL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G47720			Thiolase family protein (.1.2....		Lus10006362 [exp]	0	1
AT3G20820			Leucine-rich repeat (LRR) fami...		Lus10010949 [exp]	12.8	0.8337
AT3G19820		CBB1, EVE1, DW1...	ENHANCED VERY-LOW-FLUENCE RESP...		Lus10010215 [exp]	17.3	0.8257
AT1G20190		ATHEXPALPHA1.14...	EXPANSIN 11, expansin 11 (.1)		Lus10021845 [exp]	18.4	0.8307
AT5G43080		CYCA3;1	Cyclin A3;1 (.1)		Lus10013886 [exp]	21.5	0.8182
AT2G30410		TFCA, KIS	TUBULIN FOLDING FACTOR A, tubu...		Lus10031896 [exp]	27.5	0.8018
					Lus10024121 [exp]	28.1	0.8268
AT3G20300			Protein of unknown function (D...		Lus10009722 [exp]	30.0	0.8213
AT2G27020		PAG1	20S proteasome alpha subunit G...		Lus10037416 [exp]	31.7	0.8257
AT5G47520		AtRABA5a	RAB GTPase homolog A5A (.1)		Lus10017558 [exp]	32.0	0.7740
AT4G00660		ATRH8	RNAhelicase-like 8 (.1.2)		Lus10014783 [exp]	39.4	0.8136

Compare expression of checked genes

Lus10006362 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.