Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G07700 1049 / 0 Protein kinase superfamily protein (.1.2.3) AT5G64940 530 / 2e-179 ATATH13, ATOSA1 A. THALIANA OXIDATIVE STRESS-RELATED ABC1-LIKE PROTEIN 1, ARABIDOPSIS THALIANA ABC2 HOMOLOG 13, ABC2 homolog 13 (.1.2) AT1G79600 261 / 9e-77 Protein kinase superfamily protein (.1) AT5G24970 260 / 4e-76 Protein kinase superfamily protein (.1.2) AT1G71810 234 / 5e-67 Protein kinase superfamily protein (.1) AT3G24190 219 / 5e-61 Protein kinase superfamily protein (.1) AT4G31390 204 / 2e-56 Protein kinase superfamily protein (.1.2) AT2G39190 204 / 1e-55 ATATH8 Protein kinase superfamily protein (.1.2) AT4G24810 161 / 7e-43 Protein kinase superfamily protein (.1.2.3) AT5G24810 167 / 1e-42 ABC1 family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012317 [exp] 1352 / 0 AT3G07700 1051 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10036636 [exp] 528 / 2e-178 AT5G64940 1087 / 0.0 A. THALIANA OXIDATIVE STRESS-RELATED ABC1-LIKE PROTEIN 1, ARABIDOPSIS THALIANA ABC2 HOMOLOG 13, ABC2 homolog 13 (.1.2) Lus10035853 [exp] 511 / 4e-173 AT5G64940 1046 / 0.0 A. THALIANA OXIDATIVE STRESS-RELATED ABC1-LIKE PROTEIN 1, ARABIDOPSIS THALIANA ABC2 HOMOLOG 13, ABC2 homolog 13 (.1.2) Lus10035701 [exp] 264 / 1e-77 AT1G79600 1034 / 0.0 Protein kinase superfamily protein (.1) Lus10020103 [exp] 240 / 5e-69 AT5G24970 920 / 0.0 Protein kinase superfamily protein (.1.2) Lus10017924 [exp] 220 / 6e-62 AT1G71810 858 / 0.0 Protein kinase superfamily protein (.1) Lus10036522 [exp] 207 / 9e-57 AT2G39190 940 / 0.0 Protein kinase superfamily protein (.1.2) Lus10041406 [exp] 206 / 3e-56 AT2G39190 892 / 0.0 Protein kinase superfamily protein (.1.2) Lus10020152 [exp] 199 / 1e-54 AT4G31390 1041 / 0.0 Protein kinase superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G168600 [exp] 1104 / 0 AT3G07700 1038 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.005G083200 [exp] 536 / 0 AT5G64940 1068 / 0.0 A. THALIANA OXIDATIVE STRESS-RELATED ABC1-LIKE PROTEIN 1, ARABIDOPSIS THALIANA ABC2 HOMOLOG 13, ABC2 homolog 13 (.1.2) Potri.007G082500 [exp] 532 / 5e-180 AT5G64940 1081 / 0.0 A. THALIANA OXIDATIVE STRESS-RELATED ABC1-LIKE PROTEIN 1, ARABIDOPSIS THALIANA ABC2 HOMOLOG 13, ABC2 homolog 13 (.1.2) Potri.002G000100 [exp] 256 / 3e-75 AT1G79600 949 / 0.0 Protein kinase superfamily protein (.1) Potri.018G014000 [exp] 250 / 8e-73 AT5G24970 973 / 0.0 Protein kinase superfamily protein (.1.2) Potri.002G061000 [exp] 238 / 4e-68 AT1G71810 915 / 0.0 Protein kinase superfamily protein (.1) Potri.001G050700 [exp] 222 / 6e-62 AT3G24190 1233 / 0.0 Protein kinase superfamily protein (.1) Potri.010G221000 [exp] 209 / 3e-57 AT2G39190 965 / 0.0 Protein kinase superfamily protein (.1.2) Potri.006G275600 [exp] 200 / 4e-55 AT4G31390 1058 / 0.0 Protein kinase superfamily protein (.1.2) Potri.006G276600 [exp] 162 / 3e-41 AT5G24810 1253 / 0.0 ABC1 family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF03109 [flax] [poplar] ABC1 ABC1 family
Representative CDS sequence Show only first row Show all	>Lus10006363 pacid=23162667 polypeptide=Lus10006363 locus=Lus10006363.g ID=Lus10006363.BGIv1.0 annot-version=v1.0 ATGGCGGCACTACTGGCTTCACACAGCTGTTATTGTCGTGATGTGGAGTCCTTGAATCAAGGTAGATATATCTCGGAGAGCTTCAGTTTCTCAAGCTCAG TTTCCAGCTCATCATTTGCAGTGTCTAAGAGGCAGCATGATCATACTCGATCGAGATCTCGATTTCAAGTGCGGATGACGCAGACTGAATCATCCCCAGC ATCCAAGTTAGGCCCAAATGGACGGCCGGTTAAAATGGTGCCAGTGAATGAAGTGGTGAAGAGGAGGACGCCAAATGGTAGTAGTAGGAGTAGTAAGGTA GATTTAGTGAATGGGAAAAAAAAGGTGATTAATGGAGCTGCTAGTATAGTAAAGAAAAGTTCTTCAGTAGTTCCTGTGAGAAGATTGGCAGATAATAAAC TTCCTCCTCTTGAGGGTTTGAAGGCTCTTCCTACAGATGAAGGCTTCAGTTGGGCTGATGACAATTACAACAATGTTCAGAGGAATATTGACATCTGGTC TTTCTTCCTTGCTTTTCGGGTTCGTCTCACGTTGGATAATGCAAAATGGGCATATTTGGGGAGTTTCAGTGAAGAGAAGCAGAAAATGCGAAGGAAGAAC ACAGCTGTGTGGCTAAGGGAGCAAGTATTGCAGCTCGGTCCGACTTTTATCAAACTCGGACAGTTGTCTTCGACAAGGTCGGACCTATTCCCCAAGGAAT TTGTAGATGAGCTTGCCAAGTTGCAGGATAGAGTCCCGGCATTCCCACCTAGTAAAGCGAGAAGCTTCGTCGAGCGAGAACTGGGAGTTCCTATAGATGT GCTGTTCAGGGAGTTTGAAGACAGGCCGATAGCAGCAGCTAGCCTTGGTCAGGTGCATCGAGCTATCCTACACAACGGAGAGAAAGTCGTCGTCAAAATT CAGAGGCCTGGCCTCAAGAAGCTGTTTGATATTGATCTAAATAATATGAAGATAGTTGCAGGATACTTGCAGAAAAGTGACACTTTTGGTGGTCCGACTA ACGATTGGGTTGGTATATACGAGGAATGCGCCACGATTTTATACCAGGAGATTGACTACATCAATGAAGGAAAAAATGCAGATAGATTCCGTCGAGATTT CAGGAATATAAAGTGGGTCCGAGTACCTATGGTATTTTGGGACTACACATCCACAAAGGTGTTGACTTTGGAATATGTACCAGGCGTTAAGATTAATGAG TTGGACATGCTAGATTCCCGGGGATACAATCGTTCTCGGGTTTCATCACGAGCCATCGAGGCATACTTAATTCAGATTCTGAAAACCGGTTTCTTCCATG CGGATCCTCATCCTGGAAATCTCGCTGTAGACACCGACGAATCTCTCATCTATTACGACTTCGGTATGATGGGAGAGATAAAGGCTTTTACTAGGGAGAG ATTGCTTGGACTTTTCTATGCAGTTTATGAGAAAGATGCCAGAAAGGTTATGGAGAGCCTGATAGACCTTGGAGCTCTTCAGCCCACTGGAGACCTGTCT TCTGTGAGGAGATCTGTTCAGTACTTCTTAGACAACTTGTTAGGGCAGACGCCTGATCAACAGCAGACTTTAGCAGCAATTGGAGAGGATTTGTTTTCAA TAGCTCAGGATCAACCTTTTCGGTTCCCATCCACCTTTACATTCGTTATAAGGGCGTTTTCCACACTTGAAGGCATAGGCTACATTCTCGATCCGGACTT TTCATTCGTGAAGATTGCTGCCCCTTATGCCCAGGAGCTTTTGGATATCAGACAAAGGCAGCAGCCTGGAACACAACTAGTAGAGCAAATCAGGAAACAG GCCAATGATGCTAGAAGTTCCACAATGTCCATGCCTTATAGAGTCCAGCGGATAGAAGAGTTCGTGAAGCAACTCGAATCCGGAGACTTCAAACTCCGCG TCCGGGTACTAGAGTCGGAAAGAGCAGCAAGGAAAGCAACTATCTTGCAGATGGCAACAATGTACACAGTATTAGGAGGCACACTTGTAAACCTTGGGGT AACCTTTGGCAGTCAGGGGAGCCAACTTGTTGCCAATGGTTCATTTGTAGGAGCAGGAGTGTTCTTGTTACTGTTGATAAGGTCAATGCAAAGGGTGAAA AAGCTGGATAAATTCGAGAAGATGATCTAA
AA sequence Show only first row Show all	>Lus10006363 pacid=23162667 polypeptide=Lus10006363 locus=Lus10006363.g ID=Lus10006363.BGIv1.0 annot-version=v1.0 MAALLASHSCYCRDVESLNQGRYISESFSFSSSVSSSSFAVSKRQHDHTRSRSRFQVRMTQTESSPASKLGPNGRPVKMVPVNEVVKRRTPNGSSRSSKV DLVNGKKKVINGAASIVKKSSSVVPVRRLADNKLPPLEGLKALPTDEGFSWADDNYNNVQRNIDIWSFFLAFRVRLTLDNAKWAYLGSFSEEKQKMRRKN TAVWLREQVLQLGPTFIKLGQLSSTRSDLFPKEFVDELAKLQDRVPAFPPSKARSFVERELGVPIDVLFREFEDRPIAAASLGQVHRAILHNGEKVVVKI QRPGLKKLFDIDLNNMKIVAGYLQKSDTFGGPTNDWVGIYEECATILYQEIDYINEGKNADRFRRDFRNIKWVRVPMVFWDYTSTKVLTLEYVPGVKINE LDMLDSRGYNRSRVSSRAIEAYLIQILKTGFFHADPHPGNLAVDTDESLIYYDFGMMGEIKAFTRERLLGLFYAVYEKDARKVMESLIDLGALQPTGDLS SVRRSVQYFLDNLLGQTPDQQQTLAAIGEDLFSIAQDQPFRFPSTFTFVIRAFSTLEGIGYILDPDFSFVKIAAPYAQELLDIRQRQQPGTQLVEQIRKQ ANDARSSTMSMPYRVQRIEEFVKQLESGDFKLRVRVLESERAARKATILQMATMYTVLGGTLVNLGVTFGSQGSQLVANGSFVGAGVFLLLLIRSMQRVK KLDKFEKMI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G07700			Protein kinase superfamily pro...		Lus10006363 [exp]	0	1
AT1G52080		AR791	actin binding protein family (...		Lus10038254 [exp]	1.4	0.8918
AT1G69450			Early-responsive to dehydratio...		Lus10037139 [exp]	1.4	0.9155
AT3G54000			unknown protein		Lus10016465 [exp]	2.2	0.8723
AT4G15920		SWEET17, AtSWEE...	Nodulin MtN3 family protein (....		Lus10001475 [exp]	5.7	0.8552
AT5G56180		ATARP8	actin-related protein 8 (.1.2)		Lus10025605 [exp]	6.5	0.8443
AT2G45530			RING/U-box superfamily protein...		Lus10033252 [exp]	6.6	0.8725
AT5G38710			Methylenetetrahydrofolate redu...		Lus10034095 [exp]	7.5	0.8477
AT3G07530			unknown protein		Lus10040483 [exp]	9.9	0.8626
AT3G14910			unknown protein		Lus10043078 [exp]	11.9	0.8728
AT1G29050		TBL38	TRICHOME BIREFRINGENCE-LIKE 38...		Lus10000988 [exp]	14.5	0.8024

Compare expression of checked genes

Lus10006363 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.