Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G39920 315 / 2e-106 TFCC, POR TUBULIN-FOLDING COFACTOR C, PORCINO, C-CAP/cofactor C-like domain-containing protein (.1) AT3G57890 59 / 2e-09 Tubulin binding cofactor C domain-containing protein (.1.2) AT2G42230 55 / 4e-08 C-CAP/cofactor C-like domain-containing protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012318 [exp] 595 / 0 AT4G39920 333 / 2e-113 TUBULIN-FOLDING COFACTOR C, PORCINO, C-CAP/cofactor C-like domain-containing protein (.1) Lus10023821 [exp] 54 / 2e-07 AT3G57890 875 / 0.0 Tubulin binding cofactor C domain-containing protein (.1.2) Lus10021031 [exp] 53 / 2e-07 AT3G57890 726 / 0.0 Tubulin binding cofactor C domain-containing protein (.1.2) Lus10016279 [exp] 52 / 6e-07 AT3G57890 747 / 0.0 Tubulin binding cofactor C domain-containing protein (.1.2) Lus10012025 [exp] 52 / 7e-07 AT3G57890 835 / 0.0 Tubulin binding cofactor C domain-containing protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G074700 [exp] 383 / 1e-132 AT4G39920 332 / 6e-113 TUBULIN-FOLDING COFACTOR C, PORCINO, C-CAP/cofactor C-like domain-containing protein (.1) Potri.007G093800 [exp] 214 / 4e-68 AT4G39920 166 / 9e-50 TUBULIN-FOLDING COFACTOR C, PORCINO, C-CAP/cofactor C-like domain-containing protein (.1) Potri.016G049000 [exp] 55 / 6e-08 AT3G57890 852 / 0.0 Tubulin binding cofactor C domain-containing protein (.1.2) Potri.006G059100 [exp] 54 / 9e-08 AT3G57890 876 / 0.0 Tubulin binding cofactor C domain-containing protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0391 [flax] [poplar] CAP_C-like PF07986 [flax] [poplar] TBCC Tubulin binding cofactor C
Representative CDS sequence Show only first row Show all	>Lus10006364 pacid=23162665 polypeptide=Lus10006364 locus=Lus10006364.g ID=Lus10006364.BGIv1.0 annot-version=v1.0 ATGGAAGAAGAACCGCCAACTCCTGCGGCGGCAAACGCAAGTCCGGCCGACTCTGGAGACAAATCCATGGAGGAAGCAGCTTTAGAGAAGAAGCGCCAAG CGATGATCGATCGACTCTCCAACCGCCATCAGTCCCGGAGCATCAGTAAACCACTGGAGGACAACTCCGTCGCCTCCTTCTCCTCCAAATTCTCCGACTC CAAGCGCTCTCTAGATACTCTCCTCGCCAAGTCTTCTTCGCTAGCCCACGATCCGTCCGCACTCAGATCTCACCTCGACGGCATCTCTTCCTCCATCGCC TCGCTAGAGCAATTCGTCGCCGAGAGCTCTTACTCCCTCCCGTCGTACGAGCTTCGATCCGCTCTCAAATCCGTCGCGGAGCTCAAACAGTCTCTCGAAA ATCTTAGCGCCGAGCTTCTCCCGAAGAAGAAGTTCTCCTTCAGGAACAAATCCGCCACGGTAAGCAAATTCTCAGCACCTGTCCAACCTAAGGATCCCGA GATTCCGTCGCCTTCTCCGCCGCCGGCTTTCGTGATCCGAGAATCGCCAGGGTTTCGTAACAGAGAGAAGGAGGTATTAGCGAAGAATTTCAAAGGTCTG GGGATCGGTGAGTTCACTGTTTCCAAATTGGATTCCTGCGAAGTGAGATTGATTGGTTGCGTCAATGCGTTGTTCTTCAACAAATTGAAGAATTGCAAGG TTTACACTGGTCCTGTGATTGGTTCGGTTTTGATTGAAGAAGTTGAGGACTGTGTGTTTGTGCTGGCTTCTCATCAGATTAGGATACACAATGCTAAGGG TTGTGATTTTTATCTGAGAGTAAGGAGCAGGCCGATAATTGAAGATTGTTCAAAGGTGAGATTTGCTCCTTACTGTTTAAGGTATGAAGGGATTGATGAA GAGATGAAGGAAGCAGGGCTGGAAGAGGAGAGCGGGAAATGGGCAAATGTGGATGATTTCAAGTGGCTGAAAGCCTTGCAGTCTCCCAACTGGTCTGCTA TGGAGGAGAGTGAAAGAATTGGTTGTGTTGAGATCAAGGAACTGGGAAATGAAAATGGCAATGGTTGGCGGCCAGAGTGA
AA sequence Show only first row Show all	>Lus10006364 pacid=23162665 polypeptide=Lus10006364 locus=Lus10006364.g ID=Lus10006364.BGIv1.0 annot-version=v1.0 MEEEPPTPAAANASPADSGDKSMEEAALEKKRQAMIDRLSNRHQSRSISKPLEDNSVASFSSKFSDSKRSLDTLLAKSSSLAHDPSALRSHLDGISSSIA SLEQFVAESSYSLPSYELRSALKSVAELKQSLENLSAELLPKKKFSFRNKSATVSKFSAPVQPKDPEIPSPSPPPAFVIRESPGFRNREKEVLAKNFKGL GIGEFTVSKLDSCEVRLIGCVNALFFNKLKNCKVYTGPVIGSVLIEEVEDCVFVLASHQIRIHNAKGCDFYLRVRSRPIIEDCSKVRFAPYCLRYEGIDE EMKEAGLEEESGKWANVDDFKWLKALQSPNWSAMEESERIGCVEIKELGNENGNGWRPE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G39920		TFCC, POR	TUBULIN-FOLDING COFACTOR C, PO...		Lus10006364 [exp]	0	1
AT4G39920		TFCC, POR	TUBULIN-FOLDING COFACTOR C, PO...		Lus10012318 [exp]	1.0	0.9246
AT1G69430			unknown protein		Lus10036796 [exp]	1.4	0.9128
AT2G01570	GRAS	RGA1	REPRESSOR OF GA1-3 1, REPRESSO...		Lus10033583 [exp]	3.7	0.8757
AT2G44730	Trihelix		Alcohol dehydrogenase transcri...		Lus10011020 [exp]	5.8	0.8550
AT5G43670			Sec23/Sec24 protein transport ...		Lus10022219 [exp]	5.9	0.8781
AT2G27030		CAM5, CAM2, ACA...	calmodulin 5 (.1.2.3)		Lus10041288 [exp]	6.6	0.8661
AT1G31780			unknown protein		Lus10037280 [exp]	6.7	0.8691
AT3G26370			O-fucosyltransferase family pr...		Lus10006227 [exp]	7.1	0.8945
AT1G43690			ubiquitin interaction motif-co...		Lus10024546 [exp]	7.2	0.8889
AT2G29900		PS2	Presenilin-2 (.1)		Lus10031966 [exp]	9.5	0.8548

Compare expression of checked genes

Lus10006364 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.