Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G12720 275 / 5e-92 ATNUDX7, GFG1, AtNUDT7, NUDT7 GROWTH FACTOR GENE 1, Arabidopsis thaliana Nudix hydrolase homolog 7, MutT/nudix family protein (.1.2.3.4) AT5G47650 273 / 5e-91 ATNUDX2, ATNUDT2 ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 2, nudix hydrolase homolog 2 (.1) AT4G25434 263 / 3e-87 ATNUDT10 nudix hydrolase homolog 10 (.1.2) AT2G04450 244 / 5e-80 ATNUDX6, ATNUDT6 nucleoside diphosphates linked to some moiety X 6, Arabidopsis thaliana nucleoside diphosphate linked to some moiety X 6, nudix hydrolase homolog 6 (.1) AT5G47240 247 / 6e-80 ATNUDT8 nudix hydrolase homolog 8 (.1) AT2G04430 241 / 2e-78 ATNUDT5 nudix hydrolase homolog 5 (.1) AT2G04440 131 / 6e-37 MutT/nudix family protein (.1) AT5G06340 40 / 0.001 ATNUDX27 nudix hydrolase homolog 27 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012319 [exp] 522 / 0 AT5G47650 310 / 4e-106 ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 2, nudix hydrolase homolog 2 (.1) Lus10006366 [exp] 422 / 1e-149 AT5G47650 281 / 4e-95 ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 2, nudix hydrolase homolog 2 (.1) Lus10012320 [exp] 421 / 3e-149 AT5G47650 282 / 2e-95 ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 2, nudix hydrolase homolog 2 (.1) Lus10039079 [exp] 266 / 1e-87 AT5G47650 345 / 3e-119 ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 2, nudix hydrolase homolog 2 (.1) Lus10038780 [exp] 266 / 4e-87 AT5G47650 345 / 1e-118 ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 2, nudix hydrolase homolog 2 (.1) Lus10040169 [exp] 239 / 5e-77 AT5G47240 409 / 7e-143 nudix hydrolase homolog 8 (.1) Lus10004371 [exp] 238 / 1e-73 AT5G47240 410 / 2e-139 nudix hydrolase homolog 8 (.1) Lus10021278 [exp] 42 / 0.0005 AT5G06340 251 / 9e-85 nudix hydrolase homolog 27 (.1) Lus10004195 [exp] 41 / 0.0005 AT5G06340 236 / 1e-78 nudix hydrolase homolog 27 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G168400 [exp] 319 / 3e-108 AT5G47650 331 / 2e-113 ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 2, nudix hydrolase homolog 2 (.1) Potri.003G106100 [exp] 309 / 4e-105 AT5G47650 332 / 9e-115 ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 2, nudix hydrolase homolog 2 (.1) Potri.005G077500 [exp] 306 / 2e-103 AT5G47650 322 / 2e-110 ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 2, nudix hydrolase homolog 2 (.1) Potri.001G127700 [exp] 299 / 2e-101 AT5G47650 323 / 1e-111 ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 2, nudix hydrolase homolog 2 (.1) Potri.001G368000 [exp] 281 / 5e-94 AT5G47650 342 / 6e-119 ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 2, nudix hydrolase homolog 2 (.1) Potri.006G005400 [exp] 273 / 4e-90 AT5G47650 347 / 7e-120 ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 2, nudix hydrolase homolog 2 (.1) Potri.016G006000 [exp] 270 / 5e-89 AT5G47650 352 / 3e-122 ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 2, nudix hydrolase homolog 2 (.1) Potri.001G154300 [exp] 241 / 2e-77 AT5G47240 416 / 2e-145 nudix hydrolase homolog 8 (.1) Potri.003G080400 [exp] 235 / 3e-75 AT5G47240 401 / 1e-139 nudix hydrolase homolog 8 (.1) Potri.018G069100 [exp] 216 / 7e-68 AT5G47240 316 / 3e-106 nudix hydrolase homolog 8 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0261 [flax] [poplar] NUDIX PF00293 [flax] [poplar] NUDIX NUDIX domain
Representative CDS sequence Show only first row Show all	>Lus10006365 pacid=23162661 polypeptide=Lus10006365 locus=Lus10006365.g ID=Lus10006365.BGIv1.0 annot-version=v1.0 ATGCCTTTCTGCGGCTTACTGAGGAATTGGGTTCTTTTGTTTCACAAAGGTAAAAGCAGCGAGGGCGGTTCTTCTTCAATAAGAATCAGGAGCATGGCAT CGTCTTTCTCTTCTTCGGAAACTGCAGTTTCAGCAGATGCCAACGTTCATGGAGTGAAAGAGATTGAATTGCTGGATGCAACTGAGGATTGGTATGGTGG GCTAACCATGGCAGTCAACGACCCTGTGGATGCTGAGGAATTTGCGGCTCGGCTTAGGTATTCCCTCTCCAGATGGAAAGAACAGGGGAAGAAGGGTATT TGGATCAAACTACCCACTCCCCAGTCTAACCTAGTCCATCCAGTTATTCAGGAAGGGTTTAGGTTTCACCATGCTGAATCAGACTATGTGATGCTTGTGC GTTGGCTGCCCGAGCATCTTCCTGATACAATCCCCATCAATGCCTCTCACCGGGTTGGCGTTGGGGCGCTTGTGGTCAACGAAAACAAAGAGGTGCTGGT AGTTACTGAGAGACACGGTGGATTCAAAGGCACCGAGTATTGGAAGTTGCCAACCGGTGTAGTCGAAGAGGGAGAAGACATATGGGCAGCTGCAGTTAGA GAAGTCAAAGAAGAAACTGGAATTGATGCGGAATTCGTTGAAATGCTAACGTTTAGGCAAAGTCACAAATCATTCTTCAGCAAATCAGACCTGATGTTTG TCTGCGTGTTGCGACCACTTTCTGCTACCATCACTGCTCAACAATCCGAGATCGAAGCAGCCAAGTGGATGCCGGTCAACGAGTATGTAGAGCAACCTTA CAATCAGAAGCATGGACAATTCAGATCCATAGCAGAGATTTGCAAGGCGAAAGTGGAAGGTGCATATGCGGGGTTCTCTGCTATGCCAGTGAAATCAGCT TCAGGGAAGAAGGTTGACCTCTACTATAACAAGCAGCAAGTTCAGAACAAACTATGA
AA sequence Show only first row Show all	>Lus10006365 pacid=23162661 polypeptide=Lus10006365 locus=Lus10006365.g ID=Lus10006365.BGIv1.0 annot-version=v1.0 MPFCGLLRNWVLLFHKGKSSEGGSSSIRIRSMASSFSSSETAVSADANVHGVKEIELLDATEDWYGGLTMAVNDPVDAEEFAARLRYSLSRWKEQGKKGI WIKLPTPQSNLVHPVIQEGFRFHHAESDYVMLVRWLPEHLPDTIPINASHRVGVGALVVNENKEVLVVTERHGGFKGTEYWKLPTGVVEEGEDIWAAAVR EVKEETGIDAEFVEMLTFRQSHKSFFSKSDLMFVCVLRPLSATITAQQSEIEAAKWMPVNEYVEQPYNQKHGQFRSIAEICKAKVEGAYAGFSAMPVKSA SGKKVDLYYNKQQVQNKL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G12720		ATNUDX7, GFG1, ...	GROWTH FACTOR GENE 1, Arabidop...		Lus10006365 [exp]	0	1
AT2G17890		CPK16	calcium-dependent protein kina...		Lus10028459 [exp]	1.4	0.9205
AT5G61210		SNP33, ATSNAP33...	soluble N-ethylmaleimide-sensi...		Lus10003466 [exp]	2.0	0.9370
AT2G17890		CPK16	calcium-dependent protein kina...		Lus10041914 [exp]	4.6	0.9120
AT1G59710			Protein of unknown function (D...		Lus10030804 [exp]	6.7	0.8842
AT3G54020		AtIPCS1	Arabidopsis Inositol phosphory...		Lus10027742 [exp]	6.9	0.8489
AT2G46330		ATAGP16, AGP16	arabinogalactan protein 16 (.1...		Lus10023629 [exp]	6.9	0.8993
AT3G13880			Tetratricopeptide repeat (TPR)...		Lus10004114 [exp]	7.7	0.8330
AT4G33780			unknown protein		Lus10035665 [exp]	10.2	0.8597
AT5G66900			Disease resistance protein (CC...		Lus10022464 [exp]	11.1	0.8049
AT5G35735			Auxin-responsive family protei...		Lus10012350 [exp]	11.6	0.8583

Compare expression of checked genes

Lus10006365 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.