Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G07790 617 / 0 DGCR14-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012321 [exp] 954 / 0 AT3G07790 652 / 0.0 DGCR14-related (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G222100 [exp] 702 / 0 AT3G07790 609 / 0.0 DGCR14-related (.1) Potri.014G164200 [exp] 649 / 0 AT3G07790 563 / 0.0 DGCR14-related (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF09751 [flax] [poplar] Es2 Nuclear protein Es2
Representative CDS sequence Show only first row Show all	>Lus10006367 pacid=23162628 polypeptide=Lus10006367 locus=Lus10006367.g ID=Lus10006367.BGIv1.0 annot-version=v1.0 ATGCTTCTCTCTCCGGGTCACTCGCCGCGCCAAATCTCTTCGCCGTCTCCGTCTCTAATCTCGGAAGATGCTCACCGCCTCTCCTCCTCTTCCAAGGGAA GCGCTTCATCGGCCATCATGCCAGCGAGTTCCAGGAAACGTCCTCGAGTCCTCGATGAGGACACCTACGTGGCTGCAATCGAGAAGATCATCGAGCGGGA TTACTTCCCCGACATCTCCAAGCTCCGCGACCGTCTCGATTGGCTGGAGGCGGTGAAGACAGGCGATCCGATGCAGATACGGGATGCACAATTGAAGATC ATCGAGCGTCGCGGGAAGAGGGCTTTGGGATCTGATGCCAGCATTCGAGGAAGAAGCCAGACCAGGACTCCAGGTTCGACTTTTATGCGTAGTTTTACCC CTTTGGATGAATTCGATAATAGATCTCCTAGTGTGTTCGACGGCGAGTTGGCTGGTAATCAAGGGGAAGCTAGCGGGAACGATGCTGTTGATGTCGATGA ATCTCTAGAACTAGACGCGTTTCTCAGGAGGTATACTAGCGAGGATAATGATAGCTTTGCGAAGATATTAACCAAAGTGAACAAGAAGAGGAAAGAAAAG TATGGTCATCTGTTGGAAGGCGAGAAAGAAGATGTTAAATTGATTGAAGATGTGAAGCTGGATAGGGTTACTGATGGTTATGGGACTTCCGATCAGCCAC CAAGTACATTGGAAGGCTGGAAGTATACAGCTAAGAATTTGCTCATGTATCACCCTGCTGACAGGGGTGAAGTTGCTTTAACTGAGGAAGAGCGTGATGC TAGATTGCAGGCATTAACCAAAGAGATCAACAGGACGAACACTCGGTTCCATGGTAAGACCATGGATACAAGGCCGAACGATGATGGTACTCTCGAAGTG CTTTATACTCCGGTCGTAGGGGCGACGCCCATGCCCATGTTGGATAGATACGGGGATAAGATGAAGAAGTATGATCTAGACGATCTGCGGAAGACTCCTA ATATGTTCTATGCAGAATCAGCAAAGAAGGCCGAGAATGGCTACAACTTTGTCAAGACACCTTCGCCTGCACCTGGGGTCGACGAATCGCCATTCATCAC TTGGGGTGAGATCGAGGGGACGCCATTAAGATTGGAGACTGAAGATACCCCAATCGACATCGGTGGGAGTGGGGAAAGAACCAACTTCAGAATCCCGGAC CCGCCTGCAAGAGATGAAATGGCTCACTCGTTGTCACGAGATGCTGCAAGGAAGTTGAGGGATCGATCTAAGTTGTTCCGAAAACCACCGTTGCCTTCCC CGAGTCGAGGAGGAAGCTCCAGCCCGAGTGTTCGAACGCTGTCCCCTGCTGCCCAGAAGTTTGTGAGGAATGCGATTTCTAAGTCTTCGGCCACTGTCGA TGAATCGCTCCGTGCTAGCTATAGAGGAAGAAGTCCTTCAATTAGTACTCCTAAAGCTGGAAGAAGTACTTCTAGGTTTGGAAGAGATGATAGTAGCATG GTTTCCAGGTCACCTTCTTTGAGGGAGGGCTCTAATCCTCCTTGCTAA
AA sequence Show only first row Show all	>Lus10006367 pacid=23162628 polypeptide=Lus10006367 locus=Lus10006367.g ID=Lus10006367.BGIv1.0 annot-version=v1.0 MLLSPGHSPRQISSPSPSLISEDAHRLSSSSKGSASSAIMPASSRKRPRVLDEDTYVAAIEKIIERDYFPDISKLRDRLDWLEAVKTGDPMQIRDAQLKI IERRGKRALGSDASIRGRSQTRTPGSTFMRSFTPLDEFDNRSPSVFDGELAGNQGEASGNDAVDVDESLELDAFLRRYTSEDNDSFAKILTKVNKKRKEK YGHLLEGEKEDVKLIEDVKLDRVTDGYGTSDQPPSTLEGWKYTAKNLLMYHPADRGEVALTEEERDARLQALTKEINRTNTRFHGKTMDTRPNDDGTLEV LYTPVVGATPMPMLDRYGDKMKKYDLDDLRKTPNMFYAESAKKAENGYNFVKTPSPAPGVDESPFITWGEIEGTPLRLETEDTPIDIGGSGERTNFRIPD PPARDEMAHSLSRDAARKLRDRSKLFRKPPLPSPSRGGSSSPSVRTLSPAAQKFVRNAISKSSATVDESLRASYRGRSPSISTPKAGRSTSRFGRDDSSM VSRSPSLREGSNPPC

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G07790			DGCR14-related (.1)		Lus10006367 [exp]	0	1
AT3G07790			DGCR14-related (.1)		Lus10012321 [exp]	1.0	0.9306
AT4G30440		GAE1	UDP-D-glucuronate 4-epimerase ...		Lus10015496 [exp]	2.4	0.9253
AT3G61460		BRH1	brassinosteroid-responsive RIN...		Lus10014758 [exp]	4.5	0.8958
AT2G27260			Late embryogenesis abundant (L...		Lus10005216 [exp]	4.6	0.9060
AT5G39865			Glutaredoxin family protein (....		Lus10001669 [exp]	5.7	0.8966
AT5G66200		ARO2	armadillo repeat only 2 (.1)		Lus10028452 [exp]	6.3	0.8612
AT5G01710			methyltransferases (.1)		Lus10014232 [exp]	7.5	0.8867
AT1G78080	AP2_ERF	CAF1, RAP2.4, W...	wound induced dedifferentiatio...		Lus10016801 [exp]	8.4	0.8758
AT3G61460		BRH1	brassinosteroid-responsive RIN...		Lus10036378 [exp]	8.8	0.8953
AT5G17850			Sodium/calcium exchanger famil...		Lus10020318 [exp]	9.2	0.8955

Compare expression of checked genes

Lus10006367 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.