Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G04880 283 / 4e-90 WRKY ATWRKY1, ZAP1 zinc-dependent activator protein-1 (.1.2) AT4G26640 270 / 8e-85 WRKY ATWRKY20, WRKY20 WRKY family transcription factor family protein (.1.2) AT2G38470 229 / 9e-69 WRKY ATWRKY33, WRKY33 WRKY DNA-binding protein 33 (.1) AT2G03340 226 / 2e-67 WRKY WRKY3 WRKY DNA-binding protein 3 (.1) AT1G13960 216 / 4e-64 WRKY WRKY4 WRKY DNA-binding protein 4 (.1.2) AT3G01080 207 / 2e-61 WRKY ATWRKY58, WRKY58 WRKY DNA-binding protein 58 (.1) AT4G26440 205 / 4e-59 WRKY ATWRKY34, MSP3, WRKY34 MICROSPORE-SPECIFIC PROMOTER 3, WRKY DNA-binding protein 34 (.1) AT5G07100 193 / 9e-59 WRKY WRKY26 WRKY DNA-binding protein 26 (.1.2) AT2G37260 185 / 8e-54 WRKY DSL1, ATWRKY44, TTG2 TRANSPARENT TESTA GLABRA 2, DR. STRANGELOVE 1, WRKY family transcription factor family protein (.1.2) AT2G30250 179 / 4e-51 WRKY ATWRKY25, WRKY25 WRKY DNA-binding protein 25 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012322 [exp] 778 / 0 AT2G04880 278 / 2e-89 zinc-dependent activator protein-1 (.1.2) Lus10016595 [exp] 271 / 3e-84 AT4G26640 556 / 0.0 WRKY family transcription factor family protein (.1.2) Lus10043167 [exp] 263 / 1e-81 AT4G26640 473 / 9e-163 WRKY family transcription factor family protein (.1.2) Lus10032580 [exp] 258 / 4e-81 AT4G26640 369 / 5e-125 WRKY family transcription factor family protein (.1.2) Lus10003769 [exp] 261 / 3e-80 AT4G26640 524 / 0.0 WRKY family transcription factor family protein (.1.2) Lus10012215 [exp] 227 / 9e-68 AT2G38470 393 / 2e-131 WRKY DNA-binding protein 33 (.1) Lus10037131 [exp] 223 / 2e-67 AT2G03340 414 / 1e-141 WRKY DNA-binding protein 3 (.1) Lus10026634 [exp] 223 / 3e-67 AT1G13960 409 / 1e-139 WRKY DNA-binding protein 4 (.1.2) Lus10001265 [exp] 225 / 4e-67 AT2G38470 394 / 2e-132 WRKY DNA-binding protein 33 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G164300 [exp] 389 / 7e-131 AT2G04880 280 / 5e-89 zinc-dependent activator protein-1 (.1.2) Potri.002G221600 [exp] 346 / 6e-116 AT2G04880 255 / 3e-81 zinc-dependent activator protein-1 (.1.2) Potri.001G361600 [exp] 269 / 1e-83 AT4G26640 540 / 0.0 WRKY family transcription factor family protein (.1.2) Potri.011G087900 [exp] 254 / 7e-78 AT4G26640 555 / 0.0 WRKY family transcription factor family protein (.1.2) Potri.008G091900 [exp] 227 / 2e-68 AT2G03340 407 / 7e-138 WRKY DNA-binding protein 3 (.1) Potri.010G163000 [exp] 226 / 1e-67 AT1G13960 431 / 5e-147 WRKY DNA-binding protein 4 (.1.2) Potri.011G169300 [exp] 230 / 2e-67 AT5G56270 588 / 0.0 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 2, WRKY DNA-binding protein 2 (.1) Potri.019G123500 [exp] 226 / 5e-67 AT2G38470 299 / 3e-94 WRKY DNA-binding protein 33 (.1) Potri.013G086000 [exp] 227 / 3e-66 AT5G56270 299 / 3e-91 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 2, WRKY DNA-binding protein 2 (.1) Potri.016G128300 [exp] 223 / 8e-66 AT2G38470 377 / 8e-125 WRKY DNA-binding protein 33 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0274 [flax] [poplar] WRKY-GCM1 PF03106 [flax] [poplar] WRKY WRKY DNA -binding domain
Representative CDS sequence Show only first row Show all	>Lus10006368 pacid=23162648 polypeptide=Lus10006368 locus=Lus10006368.g ID=Lus10006368.BGIv1.0 annot-version=v1.0 ATGGATTCTTCAGTGGAAGGTCCCGAGGAACTGCCCTCTAATGAAACACAGCAAACGAAAAGCCCCTTCGACAGCAGAGCTGAAAAAGCTCAACAGATCG ATGATGACAAGACAACACATACATCAAAGAGTCAAGAGAAAACAATGTCTATAGTTGTCCACAAAGGTGCGGCTTCTCACGATTTAGACGATAGAGACTG TGTGATGCAAGTGGACAAGGAAGCAAGTACTCCTTCTGCGAATCGTGGAAAACTCTCACTAGCTATTCCTACTGTCACCGGTGGTCCGCAGCCCTTGCAA TCGGTGAAGGATGGAAGAAGTCCTGCTATACGCGAGAAAGTGTTGGAGGATGGATACAACTGGCGAAAGTACGGGCAGAAACTTGTCAAAGGCAGTGAAT TCATTCGGAGCTACTACAGATGTACGCATCCAAACTGTCAAGTGAAGAAGCAATTGGAACGTTCGCACGAAGGGAAACTTGCGGATATCGTTTATTTCGG TCAGCACGATCATCCCAAGCCGCAATCCAACATTCCACTGACAGTAGGTTTTGTTTTGTCAGTTGAAGAAAGGGCAGATCAATGCCCTTTGTCGCCTGTT GAGAAAGGCAGCAAGGGACGGCCTCCAATCAGTTCCGCGAATGCCTCGCAGATGTCAACACTAACATCCAGTGAGGATGTGAAAGCTGTGCCACCTGAAT CAGCCAGGAAAAGGGACGAAATCGATAATGATGATGATCCCCAGTCGAAACGACAAAAGAAAGTGAACCGCAGTGTCGAGCCTTCTGCCGTAGTAGAGAA GCCCGTTGGCGAACCACGCATCGTTGTTAAGACCTTAAGTGAGGAAGATATCGTAAATGATGGATATCGTTGGCGCAAATATGGGCAAAAGATGGTCAAG GGAAACCCTAACCCGAGGAGCTACTACAGGTGCTCTAGTCCTGGCTGTCCGGTTAAGAAACATGTGGAGAGGGCGTCTCACGATCCGAAGGTAGTTATAA CCAGTTACGAGGGAGAACATGATCATGATATGCCACCTTCAAGGACTGTTACTAACAACATAGCTGGTCTGGATGTTCGTACGTCAACCCCTGCAAGTGG ACAGCTCGACAGCAAACCAGCTTGCAACACCCCGGATGCCAACAATAAAACGAAGGAACAACTCAATGGCGAGTCCAGCGCTAAAGCTATAGAAGGCACT GTTAAAGAAGCTGTTGATAAAGGGAATGACATGGTTTCCCCGCGGTCCAGTGCACTGGACGAAATGAAATCGAAAAACCAGCAGAACGACAAGTCATGTC CCAAGGAGGAAAGTGATGCTGCTGGCCATGATTCAGATGCCACTACAAGCTTTATTCTCGAGGGCAGAACAAATGACGTCCAGCACACTTGTGAGTCAAA AGAGACATCAGAAGAGAACGGTAGTGCATCAGCATCAAATATCGACTCTGTTGCCAGTCACCCAGACAGCAAATCAACTCAGCAACACATTTCGGATTCG GAGGCTGTTCAAGCTAATTGA
AA sequence Show only first row Show all	>Lus10006368 pacid=23162648 polypeptide=Lus10006368 locus=Lus10006368.g ID=Lus10006368.BGIv1.0 annot-version=v1.0 MDSSVEGPEELPSNETQQTKSPFDSRAEKAQQIDDDKTTHTSKSQEKTMSIVVHKGAASHDLDDRDCVMQVDKEASTPSANRGKLSLAIPTVTGGPQPLQ SVKDGRSPAIREKVLEDGYNWRKYGQKLVKGSEFIRSYYRCTHPNCQVKKQLERSHEGKLADIVYFGQHDHPKPQSNIPLTVGFVLSVEERADQCPLSPV EKGSKGRPPISSANASQMSTLTSSEDVKAVPPESARKRDEIDNDDDPQSKRQKKVNRSVEPSAVVEKPVGEPRIVVKTLSEEDIVNDGYRWRKYGQKMVK GNPNPRSYYRCSSPGCPVKKHVERASHDPKVVITSYEGEHDHDMPPSRTVTNNIAGLDVRTSTPASGQLDSKPACNTPDANNKTKEQLNGESSAKAIEGT VKEAVDKGNDMVSPRSSALDEMKSKNQQNDKSCPKEESDAAGHDSDATTSFILEGRTNDVQHTCESKETSEENGSASASNIDSVASHPDSKSTQQHISDS EAVQAN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G04880	WRKY	ATWRKY1, ZAP1	zinc-dependent activator prote...		Lus10006368 [exp]	0	1
AT2G22720			SPT2 chromatin protein (.1.2.3...		Lus10019243 [exp]	6.5	0.6732
AT3G13225			WW domain-containing protein (...		Lus10010579 [exp]	6.5	0.6830
AT1G01040		SIN1, EMB76, EM...	SHORT INTEGUMENTS 1, EMBRYO DE...		Lus10030177 [exp]	7.9	0.6870
AT3G54620	bZIP	BZO2H4, ATBZIP2...	BASIC LEUCINE ZIPPER O2 HOMOLO...		Lus10018759 [exp]	11.0	0.6372
AT1G80780			Polynucleotidyl transferase, r...		Lus10032797 [exp]	13.0	0.6159
AT5G23750			Remorin family protein (.1.2)		Lus10024514 [exp]	13.4	0.6613
AT3G08720		ATPK2, ATPK19, ...	ARABIDOPSIS THALIANA SERINE/TH...		Lus10033125 [exp]	20.0	0.6177
AT3G17980		AtC2	Arabidopsis thaliana C2 domain...		Lus10009053 [exp]	22.4	0.6593
AT1G70740			Protein kinase superfamily pro...		Lus10001595 [exp]	24.9	0.6548
AT3G03380		DEG7, DEGP7	degradation of periplasmic pro...		Lus10042507 [exp]	25.4	0.6051

Compare expression of checked genes

Lus10006368 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.