Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G35750 1266 / 0 AHK2 histidine kinase 2 (.1) AT1G27320 1026 / 0 AHK3 histidine kinase 3 (.1) AT2G01830 969 / 0 CRE1, AHK4, WOL1, WOL, ATCRE1 WOODEN LEG 1, WOODEN LEG, CYTOKININ RESPONSE 1, ARABIDOPSIS HISTIDINE KINASE 4, CHASE domain containing histidine kinase protein (.1.2.3) AT5G10720 156 / 1e-38 CKI2, AHK5 CYTOKININ INDEPENDENT 2, histidine kinase 5 (.1) AT2G17820 156 / 2e-38 AHK1, ATHK1 histidine kinase 1 (.1) AT2G40940 116 / 1e-26 ERS1 ethylene response sensor 1 (.1) AT1G66340 102 / 5e-22 AtETR1, EIN1, ETR1 ETHYLENE RESPONSE 1, ETHYLENE RESPONSE, ETHYLENE INSENSITIVE 1, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1) AT2G47430 101 / 1e-21 CKI1 CYTOKININ-INDEPENDENT 1, Signal transduction histidine kinase (.1) AT3G23150 69 / 1e-11 ETR2 ethylene response 2, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1) AT3G04580 65 / 2e-10 EIN4 ETHYLENE INSENSITIVE 4, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012325 [exp] 2024 / 0 AT5G35750 1278 / 0.0 histidine kinase 2 (.1) Lus10015773 [exp] 995 / 0 AT1G27320 1395 / 0.0 histidine kinase 3 (.1) Lus10030772 [exp] 937 / 0 AT2G01830 1282 / 0.0 WOODEN LEG 1, WOODEN LEG, CYTOKININ RESPONSE 1, ARABIDOPSIS HISTIDINE KINASE 4, CHASE domain containing histidine kinase protein (.1.2.3) Lus10013250 [exp] 932 / 0 AT2G01830 1282 / 0.0 WOODEN LEG 1, WOODEN LEG, CYTOKININ RESPONSE 1, ARABIDOPSIS HISTIDINE KINASE 4, CHASE domain containing histidine kinase protein (.1.2.3) Lus10028992 [exp] 930 / 0 AT2G01830 1337 / 0.0 WOODEN LEG 1, WOODEN LEG, CYTOKININ RESPONSE 1, ARABIDOPSIS HISTIDINE KINASE 4, CHASE domain containing histidine kinase protein (.1.2.3) Lus10003686 [exp] 928 / 0 AT2G01830 1330 / 0.0 WOODEN LEG 1, WOODEN LEG, CYTOKININ RESPONSE 1, ARABIDOPSIS HISTIDINE KINASE 4, CHASE domain containing histidine kinase protein (.1.2.3) Lus10037032 [exp] 781 / 0 AT1G27320 1094 / 0.0 histidine kinase 3 (.1) Lus10026917 [exp] 159 / 2e-39 AT5G10720 1063 / 0.0 CYTOKININ INDEPENDENT 2, histidine kinase 5 (.1) Lus10020115 [exp] 149 / 1e-36 AT5G10720 853 / 0.0 CYTOKININ INDEPENDENT 2, histidine kinase 5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G164700 [exp] 1381 / 0 AT5G35750 1359 / 0.0 histidine kinase 2 (.1) Potri.003G171000 [exp] 1023 / 0 AT1G27320 1425 / 0.0 histidine kinase 3 (.1) Potri.008G137900 [exp] 999 / 0 AT2G01830 1390 / 0.0 WOODEN LEG 1, WOODEN LEG, CYTOKININ RESPONSE 1, ARABIDOPSIS HISTIDINE KINASE 4, CHASE domain containing histidine kinase protein (.1.2.3) Potri.010G102900 [exp] 998 / 0 AT2G01830 1381 / 0.0 WOODEN LEG 1, WOODEN LEG, CYTOKININ RESPONSE 1, ARABIDOPSIS HISTIDINE KINASE 4, CHASE domain containing histidine kinase protein (.1.2.3) Potri.001G057400 [exp] 997 / 0 AT1G27320 1384 / 0.0 histidine kinase 3 (.1) Potri.018G011400 [exp] 155 / 2e-38 AT5G10720 707 / 0.0 CYTOKININ INDEPENDENT 2, histidine kinase 5 (.1) Potri.006G270500 [exp] 153 / 9e-38 AT5G10720 725 / 0.0 CYTOKININ INDEPENDENT 2, histidine kinase 5 (.1) Potri.007G056400 [exp] 152 / 2e-37 AT2G17820 1475 / 0.0 histidine kinase 1 (.1) Potri.005G111700 [exp] 148 / 7e-36 AT2G17820 1435 / 0.0 histidine kinase 1 (.1) Potri.003G032300 [exp] 125 / 3e-29 AT1G66340 1228 / 0.0 ETHYLENE RESPONSE 1, ETHYLENE RESPONSE, ETHYLENE INSENSITIVE 1, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0025 [flax] [poplar] His_Kinase_A PF00512 [flax] [poplar] HisKA His Kinase A (phospho-acceptor) domain CL0304 [flax] [poplar] CheY PF00072 [flax] [poplar] Response_reg Response regulator receiver domain CL0025 [flax] [poplar] His_Kinase_A PF02518 [flax] [poplar] HATPase_c Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CL0165 [flax] [poplar] Cache PF03924 [flax] [poplar] CHASE CHASE domain
Representative CDS sequence Show only first row Show all	>Lus10006370 pacid=23162633 polypeptide=Lus10006370 locus=Lus10006370.g ID=Lus10006370.BGIv1.0 annot-version=v1.0 ATGAAAGGATGTTGTTGGATCATAGCTGCTGCCATGCTGCTTTGCTGTGGGTTTCTTTATCTCCGTCTTGTTGCTCAGAGGGAGGAAACATCGGTTGGAA CTGAACCTGTCTCCCTGCCGAGACATCTGATACAACTCATCAAGCCGGCAATGCCCGGAAATTTGAGGACGATGCTGCTCGTAGTGTTTCTAGTCGCTGG TTTTTCTTTGGCATTGCGTTACTTTTGGATAGGGAATCTGGAATATTATGCAAAGAGAGAAGAGACCCTGATTAACATGTGCGACGAGAGAGCCCGAATG CTGCAGGACCAATTTAATGTTAGCATGAACCACGTTCATGCCTTGGCTGTTCTGGTATCCACCTTCCACCATGGGAAAAATCCTTCAGCTATTGATCAGA AAACATTCCGCGAGTATACGGAGAGAACATCTTTCGAGAGGCCACTTACTAGCGGGGTTGCGTATGCTTTAAAAGTTCCTCAATCGGAGAGGGAGCAATT TGAGAAACATCATGGTTGGACAATTAAGAAAATGGAAGCAGATGACCAGGCACCCCTTCAAGATTGCATTCCAGATAAGCTAGATCCTGCACCCCTTCAA GATGAATATGCACCTGTTATATTTTCTCAAGAAACAGTCTCTCATATTGTCTCCATCGACATGATGTCTGGAAAGGAAGATCGCGAGAACATCTTGCGTG CAAGGGCATCTGGGAAGGGAGTTTTGACATCTCCTTTTAAGCTCTTGAAATCTAATCACTTGGGAGTTGTACTCACATTTGCAGTATATAGCGTGCCTCT TCCTCCACATGCAACATCAGAACAACTGGTTGAAGCTACGATGGGGTACCTTGGGGCATCTTATGATGTACCATCATTGGTGGAGAAGCTCCTGCATCAA CTTGCTAGCAGGGAGACCATTGTTGTGGAAGTTTACGACACTACTAATGCATCTGGTCCCATTCTAATGTATGGAAATGATGTTTCTGATGACACGACCC TATTACGAACCAGCAACCTCGACTTTGGGGATCCAGCTAGGAAGCATGAAATGCACTGCAGATTTAAGCAAAAAGCTTCAATTCCGTGGTCGGCTTTATC TACGCCAACTTTGATCCTATCTGTTACCTTTCTTCTTGGATATATCTTTCATCGATTCATCAAGGAAATTGAAGTGATGACCAGACTGAAAATACGTGCT GAAGCTGCAGATGTGGCAAAATCTCAGTTTCTTGCAACCGTTTCCCATGAGATCAGGACTCCAATGAATGGCGTTTTAGGCATGTTGCAAATGCTGATGG ATACAGAGCTTGATGACAAACAAAATGACTATGTTGAGACTGCTCATCGTAGTGGGACAGAACTAATCTCATTGATAAATGAGGTTCTTGATCAGGCGAA GATAGAATCAGGCAGGCTTGAGCTGGAAGCTGTTCCTTTTGATCTGCGGTCTGTTCTTGACAATGTTTTCTCGCTGTTTTCCATAAAATCCAGTGAAAAG GGGATCGAGTTAGCCATTTATGTCTCTGATCAAGTGCCTCAAGTGGTTATAGGCGATCCCGGAAGATTTAGACAGATCATTACAAATCTTGTTGGCAATT CAGTCAAGACAGCTGCTATAGCCAACTGTTTGCTTGCTTTCATTCAGTTTACACCTGAGAAGGGGCACATCTTTGTGTCTGTCCATCTTGCCGACCAAGT AATAAGCCCGCTAGAAATTCAGGACCCAGTTCTAAAACTGTGTGTGGATTCAGCTCAAGATGGGTCTAGCAAGTCTTACAATACACTAAGTGGCTCTCCT GTGGTCAACAGATGGAAAAGTTGGGAGAACTTCAAGAAGCTTGACAGAGTGGACACAAAAGAACCATCGATGATTAGATTACTAGTTACAGTAGAGGATA CTGGAGTTGGTATCCCGCTAGATGCACAAAGCCGCATTTTCACTCCATTCATGCAGGCTGACAGTTCCACTTCTCGAACATATGGTGGAACTGGAATTGG ATTGAGCATTAGCAAGCGTCTGGTCGATCTCATGGGTGGTGAGATGGGTTTCGTTAGTGAACGCAATGTTGGCAGTACTTTCTCCTTCACTGCTTGTTTC AGCAAAGGGGAGTTGAGTTCCCTCGATACCAAGTGGCAAGCTTTTGATACCACTATTCTAGATTTTAGAAAGTTGAAAGCTTTGGTAATCGACCCGAGAA GTATACGAGCTGAGATCAGTCGGTATCATCTCGAGAGACTAGGAATATCCGTGAACATTGCTTCATCTTTAAAAGCAGCACGGCTTTTTCTGTCTGGTCA AGCCGATATATCGATGATCCTGATTGACAAAGATGCTTGGGATGAAAAAAGTGACGGTGCTTCCCATCTCTCACTGAGGTACACAGTACAAAAGTTCATT GGAGAATCTCAAGTGAACCTTCCCAAAATTTTTCTCTTGGCCACCGCGATAACCCCTGATGAAAGTCGCGAGCTGAAATCAGCTCATGTGGTAGATGACG TGCTTATGAAGCCGCTTCGGGTAGGTGTCTTGACTGGTTGTTTGCAACAAGCCCTTGGAAGTGGCAAAAAGATTCAAGTCAAAAGGAAGAAACCGACGAT TCTTCAGAATCTGCTGCGTGGAAAGCATTTTTTGGTGGTGGATGACAATGCTGTTAACAGAAGAGTGGCACAGGGCGCTCTGGAGAGGTATGGAGCTGTT GTCACCTGTGTTAACGGTGGGAGAACTGCGGTGGAGTTGCTTGAACCGCCACATAAATTCGATGCTTGCTTCATGGATCGCCATATGCCAGAAATGGATG GATTTGAAGCTACACGTCTTATTCGAACTAGGGAGACTGAGATCAATGAGCAGATAGCATCTGGTGAAGCATCAATTGAGAATTATGGGGATAAGCCATA TTGGCATACACCAATAATGGCAATGACAGCTGATGTGATGCAGGCAACTAGTGAAGAATGCAGGAAGTGTGGAATGGATGATTATGTTGCAAAACCATTT GATGAGGAGCAACTTTACAATGCAGTGGCTCGTTTCTTCGAGGCCGGTGATAAGAGTGGCTGA
AA sequence Show only first row Show all	>Lus10006370 pacid=23162633 polypeptide=Lus10006370 locus=Lus10006370.g ID=Lus10006370.BGIv1.0 annot-version=v1.0 MKGCCWIIAAAMLLCCGFLYLRLVAQREETSVGTEPVSLPRHLIQLIKPAMPGNLRTMLLVVFLVAGFSLALRYFWIGNLEYYAKREETLINMCDERARM LQDQFNVSMNHVHALAVLVSTFHHGKNPSAIDQKTFREYTERTSFERPLTSGVAYALKVPQSEREQFEKHHGWTIKKMEADDQAPLQDCIPDKLDPAPLQ DEYAPVIFSQETVSHIVSIDMMSGKEDRENILRARASGKGVLTSPFKLLKSNHLGVVLTFAVYSVPLPPHATSEQLVEATMGYLGASYDVPSLVEKLLHQ LASRETIVVEVYDTTNASGPILMYGNDVSDDTTLLRTSNLDFGDPARKHEMHCRFKQKASIPWSALSTPTLILSVTFLLGYIFHRFIKEIEVMTRLKIRA EAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDDKQNDYVETAHRSGTELISLINEVLDQAKIESGRLELEAVPFDLRSVLDNVFSLFSIKSSEK GIELAIYVSDQVPQVVIGDPGRFRQIITNLVGNSVKTAAIANCLLAFIQFTPEKGHIFVSVHLADQVISPLEIQDPVLKLCVDSAQDGSSKSYNTLSGSP VVNRWKSWENFKKLDRVDTKEPSMIRLLVTVEDTGVGIPLDAQSRIFTPFMQADSSTSRTYGGTGIGLSISKRLVDLMGGEMGFVSERNVGSTFSFTACF SKGELSSLDTKWQAFDTTILDFRKLKALVIDPRSIRAEISRYHLERLGISVNIASSLKAARLFLSGQADISMILIDKDAWDEKSDGASHLSLRYTVQKFI GESQVNLPKIFLLATAITPDESRELKSAHVVDDVLMKPLRVGVLTGCLQQALGSGKKIQVKRKKPTILQNLLRGKHFLVVDDNAVNRRVAQGALERYGAV VTCVNGGRTAVELLEPPHKFDACFMDRHMPEMDGFEATRLIRTRETEINEQIASGEASIENYGDKPYWHTPIMAMTADVMQATSEECRKCGMDDYVAKPF DEEQLYNAVARFFEAGDKSG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G35750		AHK2	histidine kinase 2 (.1)		Lus10006370 [exp]	0	1
AT5G58160			actin binding (.1)		Lus10036612 [exp]	2.4	0.9054
AT5G65880			unknown protein		Lus10011719 [exp]	5.7	0.8731
AT1G15910		FDM1	factor of DNA methylation 1, X...		Lus10009217 [exp]	7.6	0.8993
AT4G11790			Pleckstrin homology (PH) domai...		Lus10006338 [exp]	8.3	0.8683
AT4G02570		AXR6, ATCUL1	AUXIN RESISTANT 6, cullin 1 (....		Lus10032200 [exp]	10.0	0.8846
AT5G02520			unknown protein		Lus10025814 [exp]	11.8	0.8822
AT5G11010			Pre-mRNA cleavage complex II p...		Lus10033124 [exp]	13.0	0.8816
AT2G13650		GONST1	golgi nucleotide sugar transpo...		Lus10024126 [exp]	14.5	0.8779
AT3G54340	MADS	AP3, ATAP3	APETALA 3, K-box region and MA...		Lus10010630 [exp]	15.5	0.8452
AT5G08300			Succinyl-CoA ligase, alpha sub...		Lus10017337 [exp]	15.9	0.8762

Compare expression of checked genes

Lus10006370 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.