Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G26730 139 / 2e-40 Fasciclin-like arabinogalactan family protein (.1) AT5G16920 98 / 1e-24 Fasciclin-like arabinogalactan family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039146 [exp] 87 / 4e-20 AT5G16920 119 / 1e-31 Fasciclin-like arabinogalactan family protein (.1) Lus10013786 [exp] 83 / 9e-19 AT5G16920 125 / 6e-34 Fasciclin-like arabinogalactan family protein (.1) Lus10012326 [exp] 44 / 1e-05 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G016700 [exp] 103 / 4e-28 AT5G26730 91 / 5e-23 Fasciclin-like arabinogalactan family protein (.1) Potri.019G049600 [exp] 102 / 2e-26 AT5G16920 154 / 2e-45 Fasciclin-like arabinogalactan family protein (.1) Potri.016G009000 [exp] 64 / 8e-14 AT5G16920 57 / 1e-11 Fasciclin-like arabinogalactan family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10006371 pacid=23162623 polypeptide=Lus10006371 locus=Lus10006371.g ID=Lus10006371.BGIv1.0 annot-version=v1.0 ATGGCTTTCTGGATTCTCATCCTTTCCTTTCTGCCACTTCTGGCACCTTCACAAGCTCAATCATCCTCAAACTCAATCAACCAAACCGACCTCCAATTCG CCATGGCCAACATGAGGGCAATGTCCTATCACGGATTTGTCATCCTCCTCAAGATCCTCGACAGCACCCCTGACACGCTTCACGAAGGAGAGCTGACCTT CCTCATGCCCACCAACGACGAGCTATCAGGACTCAACCTGACAGCCGATCATCTCCACGACTTCGTTCTCAGCCACTCCATCCCGTCAGCTCTACTGCTC ACCCACCTCCTGCATTTCCCCAACGGATCACTGGTACCATCCGGTAGCCCGAACAAGCTGCTGAGAATCACTAACAGCCGCAGATCGGGACTGTTCGTGA ACAATGCCAGAATCACCACTCCGAATGTCTGTCTCAACTCTATGATCAAGTGCCATGGAGTCGACGCTGCCATTACATTTGACGACAGTGATTCTTCTCC TCCTTCTGCCGCATCTTTCGTAACGCTTGATCTCAGCCTCAATGTTCGTACTCCAAAGTGGCCGGTATCTGCGAATTCTGCCTCTGATGCAGGATCTTCC TCGTCCTTGCATCTGGATAATATCCCTGCACCGCACTGA
AA sequence Show only first row Show all	>Lus10006371 pacid=23162623 polypeptide=Lus10006371 locus=Lus10006371.g ID=Lus10006371.BGIv1.0 annot-version=v1.0 MAFWILILSFLPLLAPSQAQSSSNSINQTDLQFAMANMRAMSYHGFVILLKILDSTPDTLHEGELTFLMPTNDELSGLNLTADHLHDFVLSHSIPSALLL THLLHFPNGSLVPSGSPNKLLRITNSRRSGLFVNNARITTPNVCLNSMIKCHGVDAAITFDDSDSSPPSAASFVTLDLSLNVRTPKWPVSANSASDAGSS SSLHLDNIPAPH

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G26730			Fasciclin-like arabinogalactan...		Lus10006371 [exp]	0	1
AT1G17020		ATSRG1, SRG1	senescence-related gene 1 (.1)		Lus10030934 [exp]	4.0	0.7190
AT4G17720			RNA-binding (RRM/RBD/RNP motif...		Lus10030952 [exp]	10.5	0.6938
AT3G12580		ATHSP70, HSP70	ARABIDOPSIS HEAT SHOCK PROTEIN...		Lus10023419 [exp]	14.2	0.7147
AT5G28470			Major facilitator superfamily ...		Lus10024345 [exp]	14.3	0.7066
AT5G59730		ATEXO70H7	exocyst subunit exo70 family p...		Lus10005436 [exp]	19.3	0.7052
AT1G47480			alpha/beta-Hydrolases superfam...		Lus10034068 [exp]	20.6	0.6931
AT1G24110			Peroxidase superfamily protein...		Lus10010716 [exp]	24.3	0.6894
AT3G62260			Protein phosphatase 2C family ...		Lus10009993 [exp]	29.2	0.6760
AT5G27740		RFC3, EMB251, E...	replication factor C 3, EMBRYO...		Lus10041764 [exp]	36.7	0.6741
AT3G14130			Aldolase-type TIM barrel famil...		Lus10008133 [exp]	38.5	0.6391

Compare expression of checked genes

Lus10006371 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.