Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G48160 853 / 0 OBE2 OBERON2, Protein of unknown function (DUF1423) (.1), Protein of unknown function (DUF1423) (.2) AT3G07780 806 / 0 OBE1 OBERON1, Protein of unknown function (DUF1423) (.1) AT3G63500 279 / 2e-83 Protein of unknown function (DUF1423) (.1), Protein of unknown function (DUF1423) (.2) AT1G14740 262 / 2e-78 Protein of unknown function (DUF1423) (.1) AT5G57380 64 / 1e-10 VIN3 VERNALIZATION INSENSITIVE 3, Fibronectin type III domain-containing protein (.1) AT3G24440 58 / 1e-08 VRN5, VIL1 VERNALIZATION 5, VIN3-LIKE 1, Fibronectin type III domain-containing protein (.1) AT2G18880 43 / 0.0006 VIL3, VEL2 VIN3-like 3, vernalization5/VIN3-like 2, vernalization5/VIN3-like (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012327 [exp] 1147 / 0 AT5G48160 878 / 0.0 OBERON2, Protein of unknown function (DUF1423) (.1), Protein of unknown function (DUF1423) (.2) Lus10016399 [exp] 297 / 2e-88 AT3G63500 717 / 0.0 Protein of unknown function (DUF1423) (.1), Protein of unknown function (DUF1423) (.2) Lus10019718 [exp] 262 / 1e-75 AT3G63500 665 / 0.0 Protein of unknown function (DUF1423) (.1), Protein of unknown function (DUF1423) (.2) Lus10013248 [exp] 241 / 9e-74 AT1G14740 466 / 7e-160 Protein of unknown function (DUF1423) (.1) Lus10030770 [exp] 230 / 8e-71 AT1G14740 394 / 7e-133 Protein of unknown function (DUF1423) (.1) Lus10030769 [exp] 61 / 9e-11 AT1G14740 136 / 5e-38 Protein of unknown function (DUF1423) (.1) Lus10010550 [exp] 60 / 4e-09 AT1G05410 356 / 1e-118 Protein of unknown function (DUF1423) (.1), Protein of unknown function (DUF1423) (.2) Lus10042869 [exp] 54 / 3e-07 AT5G57380 237 / 5e-71 VERNALIZATION INSENSITIVE 3, Fibronectin type III domain-containing protein (.1) Lus10028170 [exp] 53 / 5e-07 AT5G57380 239 / 8e-72 VERNALIZATION INSENSITIVE 3, Fibronectin type III domain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G164800 [exp] 1038 / 0 AT5G48160 859 / 0.0 OBERON2, Protein of unknown function (DUF1423) (.1), Protein of unknown function (DUF1423) (.2) Potri.002G221500 [exp] 996 / 0 AT5G48160 811 / 0.0 OBERON2, Protein of unknown function (DUF1423) (.1), Protein of unknown function (DUF1423) (.2) Potri.009G059000 [exp] 307 / 5e-92 AT3G63500 693 / 0.0 Protein of unknown function (DUF1423) (.1), Protein of unknown function (DUF1423) (.2) Potri.010G102600 [exp] 301 / 8e-92 AT1G14740 773 / 0.0 Protein of unknown function (DUF1423) (.1) Potri.008G138100 [exp] 296 / 1e-90 AT1G14740 729 / 0.0 Protein of unknown function (DUF1423) (.1) Potri.001G264100 [exp] 298 / 1e-88 AT3G63500 660 / 0.0 Protein of unknown function (DUF1423) (.1), Protein of unknown function (DUF1423) (.2) Potri.018G091500 [exp] 53 / 4e-07 AT4G30200 612 / 0.0 VIN3-Like 2, vernalization5/VIN3-like 1, vernalization5/VIN3-like (.1.2.3.4) Potri.006G167800 [exp] 49 / 1e-05 AT4G30200 627 / 0.0 VIN3-Like 2, vernalization5/VIN3-like 1, vernalization5/VIN3-like (.1.2.3.4) Potri.010G086600 [exp] 49 / 1e-05 AT1G05410 442 / 2e-152 Protein of unknown function (DUF1423) (.1), Protein of unknown function (DUF1423) (.2) Potri.002G111600 [exp] 45 / 0.0002 AT2G18880 262 / 7e-81 VIN3-like 3, vernalization5/VIN3-like 2, vernalization5/VIN3-like (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0390 [flax] [poplar] zf-FYVE-PHD PF07227 [flax] [poplar] PHD_Oberon PHD - plant homeodomain finger protein
Representative CDS sequence Show only first row Show all	>Lus10006372 pacid=23162621 polypeptide=Lus10006372 locus=Lus10006372.g ID=Lus10006372.BGIv1.0 annot-version=v1.0 ATGGGTGCATCCTCTGGTTCTAATATCATCCCCAAAATGTTGCCTCCGCGTCAGCAGCCCCGCCCAAGTGGATTGCAGACTTCTTTGTCGCTTCTCCCAT CTGATACTCGCATGTCCCCTGATGCTCAGGAGCCGAGATCTAACTCTGAAAATGTCCGCGAGTCCCCTACCGAGAGTGCCAGTTCGCGGGAAACTTGGCC TACTGCCGAGGCTATCATGGCAAAGAAGTTGGAAAATGGGAAGGCTGAAAACGATGGTCCCGAGCAGTCTGTCATTCGTCGTCTGTCTTCTGCTGACAGG GTAACTCTTCGTGACATAGCTAGAGAGAGAGTTGATGTGATCTCAGAGAAGATGCACCGACTCCCTGACGAGTTTCTGGATGAGCTGAAAAATGGACTCC GCATAATCCTCGAAGGGAACGGTGGCTCGCAACAGAGGGAGGAGTTCCTGATTTTGCAGAAGCTTGTCCAGAGTAGGGCGGATCTGACGGCTAAGACATT GATTAGAGCTCACCGTCTACAGCTTGAAATCCTTGTTGCCATAAATACTGGAATCCAGGCTTTCTTGCATCCCAACATTAGTTTCGCTCAGACGGCTCTC ATTGAGGTCTTTGTGTTCAAGAGGTGCAGAAATATAGCTTGCCAGAACCAACTCCCAGCTGATGATTGCACCTGTGACATATGCACCAACAGAAACGGAT TCTGTAATCTTTGCATGTGTGTGATCTGCAACAAGTTTGATTTTGAAGTGAATACTTGTCGGTGGGTTGGCTGTGACCTGTGTTCTCATTGGACACATAC TGACTGTGCGATTCGTGATGGGCAAATTGCTATGGGACCATCAACCAAAAGCGGAGCTGGACCAGTTGAAATGCTTTTCCGATGCCGTGCATGTAACAGA ACATCAGAGCTCTTAGGTTGGGTAAAGGATGTTTTCCAACATTGTGCACCAGCATGGGAGAGAGATGCTCTAATGAGAGAGCTTGACTTCGTGAGTAGAA TCTTCCGTGGTAGTGAAGATACTAGAGGAAGAAAACTCTTCTGGAAGTGTGAGGAACTAATTGATAAAATGAAGGGTGGACTTGTAGAGTCTTCAGCTTG CAGAGCAATATTGATGTTCTTCCAAGAGATCGATGGTGACTCTCCAAAACTCCTGGAAAATGGGGAAGGTGGGAGATTGATTGCTCCCCAGGAAGCCTGC AGCAGGATTGCTGAAGTGGTACAGGAAGCGATAAGGAAAATGGAAATGGTTGCTGATGAGAAGATGAGAATGTTCAAAAAAGCCCGTATGGGACTTGAAG CTTGCGACCGTGAGTTGGAGGAGAAGGCCAAGGAAGTAACAGAACTGAAGATGGATAGGCAAAAGAAGAAGCTACAGATAGACGAGCTCGAAAGAATAGT GAGGCTTAAGCAGGCAGAGGCGGACATGTTCCAGCTCAAGGCTAACGAAGCGAAACGAGAAGCCGAGAGGCTGCAGAGGATAGCTCTTGCCAAGACGGAA AAATCGGAAGAAGAATATGCTAATAGCTATCTGAAGCTTCGGCTGAGTGAAGCTGAGGCGGAGAAGCAGTATCTTTTCGAGAAGATTAAATTACAGGAAA GTTCTCGCACGTCACAGAGCGGAGACGGTAGCGATCCATCACAGGGACTGTCATATTCCAAAATCCATGACCTGCTTCATAGCTACAACGCAGGGTCAAA GTCAGACTCCCAGCCGAGTGACCGCCATCACTTCAGAACCAATCCGTGA
AA sequence Show only first row Show all	>Lus10006372 pacid=23162621 polypeptide=Lus10006372 locus=Lus10006372.g ID=Lus10006372.BGIv1.0 annot-version=v1.0 MGASSGSNIIPKMLPPRQQPRPSGLQTSLSLLPSDTRMSPDAQEPRSNSENVRESPTESASSRETWPTAEAIMAKKLENGKAENDGPEQSVIRRLSSADR VTLRDIARERVDVISEKMHRLPDEFLDELKNGLRIILEGNGGSQQREEFLILQKLVQSRADLTAKTLIRAHRLQLEILVAINTGIQAFLHPNISFAQTAL IEVFVFKRCRNIACQNQLPADDCTCDICTNRNGFCNLCMCVICNKFDFEVNTCRWVGCDLCSHWTHTDCAIRDGQIAMGPSTKSGAGPVEMLFRCRACNR TSELLGWVKDVFQHCAPAWERDALMRELDFVSRIFRGSEDTRGRKLFWKCEELIDKMKGGLVESSACRAILMFFQEIDGDSPKLLENGEGGRLIAPQEAC SRIAEVVQEAIRKMEMVADEKMRMFKKARMGLEACDRELEEKAKEVTELKMDRQKKKLQIDELERIVRLKQAEADMFQLKANEAKREAERLQRIALAKTE KSEEEYANSYLKLRLSEAEAEKQYLFEKIKLQESSRTSQSGDGSDPSQGLSYSKIHDLLHSYNAGSKSDSQPSDRHHFRTNP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G48160		OBE2	OBERON2, Protein of unknown fu...		Lus10006372 [exp]	0	1
AT5G48160		OBE2	OBERON2, Protein of unknown fu...		Lus10012327 [exp]	1.4	0.9015
AT1G03350			BSD domain-containing protein ...		Lus10012761 [exp]	4.5	0.8665
AT4G27650		PEL1	PELOTA, Eukaryotic release fac...		Lus10020376 [exp]	8.1	0.8324
AT1G65430		ATARI8, ARI8	ARABIDOPSIS ARIADNE 8, ARIADNE...		Lus10020229 [exp]	13.0	0.8316
AT2G16090		ATARI2, ARI2, A...	ARABIDOPSIS ARIADNE 2, ARIADNE...		Lus10026319 [exp]	13.0	0.8371
AT5G67380		ATCKA1, CKA1	casein kinase alpha 1 (.1.2)		Lus10019288 [exp]	15.3	0.8597
AT1G76390		PUB43	plant U-box 43, ARM repeat sup...		Lus10013216 [exp]	18.7	0.7975
AT1G58200		MSL3	MSCS-like 3 (.1.2)		Lus10012733 [exp]	20.7	0.8185
AT3G48860			unknown protein		Lus10032546 [exp]	20.8	0.8249
AT2G46550			unknown protein		Lus10005973 [exp]	22.2	0.8171

Compare expression of checked genes

Lus10006372 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.