Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G31160 619 / 0 DCAF1 DDB1-CUL4 associated factor 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012331 [exp] 2065 / 0 AT4G31160 1778 / 0.0 DDB1-CUL4 associated factor 1 (.1) Lus10040495 [exp] 1514 / 0 AT4G31160 1325 / 0.0 DDB1-CUL4 associated factor 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G280200 [exp] 1560 / 0 AT4G31160 1723 / 0.0 DDB1-CUL4 associated factor 1 (.1) Potri.007G009500 [exp] 44 / 0.0007 AT3G49660 469 / 4e-168 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10006376 pacid=23162634 polypeptide=Lus10006376 locus=Lus10006376.g ID=Lus10006376.BGIv1.0 annot-version=v1.0 ATGCAAAAACTGCTTGCTGTGCCACGAGTTGAACACACCTACTTTGGTCTTTCTTCATGCTTATTTACTATAGGTTCTCTACAGGGAATCATGGAGCGTG TATGTGCTCTTCCATCAGTTGTTGTGGAGCAGGTGGTTGGGTTAGCTATTCAACTTTTGGAGTGCTCCCAAGATCAAGCCAGGAAAAATGCAGCCTTATT TTTTGGTGCTGCCTTTGTATTTAGAGCTGTGATTGATGCTTTCGATGCTCAAGATGGTTTGCAGAAGTCACTTAGCCTTTTAAATGAAGCTGCTTCAGTT AGATCTGGTGGCAATTCAGGGTCGTTAAACCTGTCTGGTTCTGCTGCCCTTCGTACCGATCGATCTCCATCGGAAGTGCTGACGTCATCAGAGAAACAGA TAGCTTATCATACTTCTGTTGCATTGCGACAATATTTCAGAGGACATTTTCTTCTGCTTGTGGAATCAATTCGTCCAAATAAAAACAGCCGAAGTTTGGC TAGGAGCCTACCAAGTGCAAGGGCTGCATACAAGCCTCTTGACTTGAGTAATGAGGCTATGGATGCCATCTTTATGCAATTACAGAAGGATCGAAAGTTA GGTTCCATTTTTGCAAGAGCTCGTTTTCCTGCTGTCGACAAGTTCTTACGGTTTAATGGGCATATTATTATGTTGGAATTGTGTCAGGCTCCACCCGTTG AACGCTATTTGCATGACTTGCTTCAGTATGCTCTGGGTGTCCTCCATATTGTTACATTAGTCAATGATGGCCGCAAAATGATAGTGAATGCTACCTTAAG CAATAATCGTGTTGGCATAGCTGTTATACTGGATGCAGCAAATGTCATTGGTAATTATGTGGATCCCGAGATTATACAACCAGCATTGAATGTGCTAATA AACCTTGTTTGTCCACCTCCTTCAATAAGTAACAGACCACAGTCCTCTGGTGCTGGTAATATCCAAGATCGATCTTCTAATATCCCTAGCCATGGTGATC AAAGGGAGCGGAATGGTGAGTTAAGTGCAGCCGATCGAGGAGGCCGCTCAATTGGAAGTGCTATGCAAGCATCTGTTAATCCTACAGCAACGTCGAGATT GGTTGGTGATAGAACAATATCTTTAGGTTCTGGAGCAGGTTTTTCAGGACTTGCTACACAGATGGAACAGGGATATCGTATGGCTAGAGAGGCTGTTCGT GGAAACAATGGTATAAAGGTGCTACTGCATCTCCTCCAGCCACGCATATATTCTCCTCCTGTTGCCCTTGACTGTATCCGTGCACTTGCTTGCCGGGTAC TGCTTGGCTTAGCGAGAGATGATACAATTGCACACATATTGACCAAACTCCAGGTTGGTAAAAAGCTATCAGAATTAATTCGAGATTCAGGTGGCCAAGG CAGGTGGCAAACTGAGCTCGCTCAGCTGGCAATTGAGCTAATTGGGATTGTGACTAATTCTGGGCGGGCAAGCACACTGGCTGCTACTGATGCTGCCACA CCCACATTGCGGCGCATCGAAAGAGCTGCTATAGCAGCAGCTACTCCTATCACGTATCATTCGAGGGAACTGTTGCTTCTCATTCATGAACACCTACAAG CATCTGGTTTGGTCGCAGCTGCTGATGCACTATTGAAAGACGCTCAGTTGACGCCTTTGCCATCTTCTCTTGCACCTCTAGAATCTATCCAGGAGACTCC TTTTGTGCAGATTGAGTGGCCATCTGGGCGCGCACCCAGTGGTTTTCTGTCTGAAAAATCCAAAGCAATTGTGAATGAAGATCGCAATATCAGATGTGAT TTGTCTGTGTCTGCAAAAAAGAAGCCCCTTTTGTTCTCACCATCTTTTGGATCGTCTAAAAAGTCATTCAGTGGCTCAAAGCAATATCAACCTCCTTCAG ATATGTTGGGAAAAGAAGCCCTGTCAGAATCTGTGTCAAAGAACAACTTTGAGAAAGAGCCTTTGTGCAAGACCCCAACTCTTCTTCCAGCTAAACGCAA GCTATCAGATCTAAAGGATATCGGCCTGGCTTCATCTGGAAAGCGACTGAATTCTGGCGAGCACGGTTTCCGTTCTCCAGTCTTTTCCACACCGGCTAAT GCTCGGAAGACTGGCGATGGTTTGACTACACCTTTCTCTTACACGAGGGACATTCATACTAGGTCTACGCCGTTTAGTGCTATAGATTATATAGATGAAA GTCCCTGCCCTAGTTCCGCTCAACCCGGAGTTCTCACTGACATTTCTAGCAACTCGGAGCGGTTAACATTAGACTCTATTGTGGTTCAGTATCTGAAGCA CCAACATCGCCAGTGCCCAGCACCTATAACAACTCTTCCACCACTCTCCTTGCTGCACCCACATGTTTGCCCAGAACCAAAAAGGTGCCTTGATGCACCA TCAAATGTGACAGCTAGGATTGGTTCACGGGAGTTCAGAAGTTCGTATGGTGGGATTCACGGAAATCGCAAGGACCGACAATTCGTGTACAGCAGATTCA GACCATGGAGAACTTGCAGGGACGATGCTGGTGCCCTGCTAACCTGCGTGACGTTCCTTGGCAACTCTTCTCATGTTGCAGTTGGCAGCCACAATGGGGA GGTTAAAATTTTCGATTCCAACAGCAGCAATTTGTTGGAGAGCTGCACAACCCACCAGGCTCCTCTGACTCATGTTCAATCACATCTAGCTGGGGAGACA CAGTTGGTGCTATCTTCAAGTTCTCAGGATGTTTGTCTGTGGGATGCTTCTTCAATCTCTGGAGGTCCCATGCACACCCTGGAAGGGCGCAAAGCTGCAA AGTTCAGCAATTCTGGCGACATATTTGCGACCCTAACAACAGACGTATCGCGAAGAGAAATTCTGCTCTATGATGTCCAAACCTGCCAAGTAATCTCGAC TTTGTCAGATACGAATCCAAGTTCTACAGGCAGGGGTCATGTCTATCCACCGATACACTTTAGCCCTTGCGATACAATGCTTCTTTGGAACGGAGTCTTG TGGGATCGACGGCAGTCTGCTCCTGTTCATCGCTTTGATCAGTTCACTGATTATGGAGGGGGGGGGGTTTATCCTGCGAGGAATGAGGTGATTATAAACT CAGAGGTCTGGGATCTGCGGAGGAAGTTCAAGCTTCTACGGAGTGTACCCTCGTTGGATCAAACAACTATAACCTTCAATGCACGAGGAGATGTGATCTA TGCTATCTTGAGGAGAAACCTGGAGGACGTGATGGCGGCAGTTCACACTCGCCGTGTGAAGCACCCACTGTTTGCAGCTTTCCGAACGGTGGACGCGATC AATTACTCGGAGATAGCAACTGTGCCGGTGGACCGCTGTGTTCTCGATTTTGCATCGGAGCCTACGGATTCATTTCTCGGGTTGATCACCATGGATGACC AAGAGGAGATGTACTCGTCGGCTAGAGTTTACGAGATTGGTAGAAGGAGGCCTACTGATGATGACTCTGATCCTGATGATGCTGATGAGGAGGACGAGGA CGAAGATGATGACGACGAGGACGATGATGATGTTGATTCAATCTCAGGGCCTGATTTTGGCGGCGATGGTGAGAGCGACGCGGATGACTTGAGCAATGAT GATGATTCAGATGACAATGAGGATGATGTGGACTTCATGATGGATGATGTGGTGTTTGGTGGAGGAGGAGGTGGATTACTTGAGATTGTGACGGACGGGG ATGATGATGATGATGACGACGACAGTCAAGTGTTGGAATCATACAGTAGCGGGGAAGAAGAGGACTTCATGGGGTAA
AA sequence Show only first row Show all	>Lus10006376 pacid=23162634 polypeptide=Lus10006376 locus=Lus10006376.g ID=Lus10006376.BGIv1.0 annot-version=v1.0 MQKLLAVPRVEHTYFGLSSCLFTIGSLQGIMERVCALPSVVVEQVVGLAIQLLECSQDQARKNAALFFGAAFVFRAVIDAFDAQDGLQKSLSLLNEAASV RSGGNSGSLNLSGSAALRTDRSPSEVLTSSEKQIAYHTSVALRQYFRGHFLLLVESIRPNKNSRSLARSLPSARAAYKPLDLSNEAMDAIFMQLQKDRKL GSIFARARFPAVDKFLRFNGHIIMLELCQAPPVERYLHDLLQYALGVLHIVTLVNDGRKMIVNATLSNNRVGIAVILDAANVIGNYVDPEIIQPALNVLI NLVCPPPSISNRPQSSGAGNIQDRSSNIPSHGDQRERNGELSAADRGGRSIGSAMQASVNPTATSRLVGDRTISLGSGAGFSGLATQMEQGYRMAREAVR GNNGIKVLLHLLQPRIYSPPVALDCIRALACRVLLGLARDDTIAHILTKLQVGKKLSELIRDSGGQGRWQTELAQLAIELIGIVTNSGRASTLAATDAAT PTLRRIERAAIAAATPITYHSRELLLLIHEHLQASGLVAAADALLKDAQLTPLPSSLAPLESIQETPFVQIEWPSGRAPSGFLSEKSKAIVNEDRNIRCD LSVSAKKKPLLFSPSFGSSKKSFSGSKQYQPPSDMLGKEALSESVSKNNFEKEPLCKTPTLLPAKRKLSDLKDIGLASSGKRLNSGEHGFRSPVFSTPAN ARKTGDGLTTPFSYTRDIHTRSTPFSAIDYIDESPCPSSAQPGVLTDISSNSERLTLDSIVVQYLKHQHRQCPAPITTLPPLSLLHPHVCPEPKRCLDAP SNVTARIGSREFRSSYGGIHGNRKDRQFVYSRFRPWRTCRDDAGALLTCVTFLGNSSHVAVGSHNGEVKIFDSNSSNLLESCTTHQAPLTHVQSHLAGET QLVLSSSSQDVCLWDASSISGGPMHTLEGRKAAKFSNSGDIFATLTTDVSRREILLYDVQTCQVISTLSDTNPSSTGRGHVYPPIHFSPCDTMLLWNGVL WDRRQSAPVHRFDQFTDYGGGGVYPARNEVIINSEVWDLRRKFKLLRSVPSLDQTTITFNARGDVIYAILRRNLEDVMAAVHTRRVKHPLFAAFRTVDAI NYSEIATVPVDRCVLDFASEPTDSFLGLITMDDQEEMYSSARVYEIGRRRPTDDDSDPDDADEEDEDEDDDDEDDDDVDSISGPDFGGDGESDADDLSND DDSDDNEDDVDFMMDDVVFGGGGGGLLEIVTDGDDDDDDDDSQVLESYSSGEEEDFMG

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G31160		DCAF1	DDB1-CUL4 associated factor 1 ...		Lus10006376 [exp]	0	1
AT4G31160		DCAF1	DDB1-CUL4 associated factor 1 ...		Lus10012331 [exp]	1.4	0.9131
AT1G51965		ABO5	ABA Overly-Sensitive 5 (.1)		Lus10037592 [exp]	3.2	0.7934
AT4G24500			hydroxyproline-rich glycoprote...		Lus10020639 [exp]	3.5	0.8014
AT3G16620		ATTOC120	ARABIDOPSIS THALIANA TRANSLOCO...		Lus10005063 [exp]	6.9	0.8056
AT3G11640			unknown protein		Lus10021290 [exp]	9.2	0.7550
AT3G16620		ATTOC120	ARABIDOPSIS THALIANA TRANSLOCO...		Lus10027835 [exp]	10.8	0.7998
AT1G68720		ATTADA, TADA	ARABIDOPSIS THALIANA TRNA ADEN...		Lus10034402 [exp]	17.3	0.7222
AT5G08550		ILP1	increased level of polyploidy1...		Lus10001949 [exp]	18.3	0.7644
AT3G06270			Protein phosphatase 2C family ...		Lus10034009 [exp]	19.6	0.7090
AT1G24265			Protein of unknown function (D...		Lus10003127 [exp]	22.2	0.7806

Compare expression of checked genes

Lus10006376 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.