Plant FIBer expression Database

Lus10006377 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G31160 407 / 7e-125 DCAF1 DDB1-CUL4 associated factor 1 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10012331
[exp]
970 / 0 AT4G31160 1778 / 0.0 DDB1-CUL4 associated factor 1 (.1)
Lus10040495
[exp]
418 / 5e-129 AT4G31160 1325 / 0.0 DDB1-CUL4 associated factor 1 (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.006G280200
[exp]
619 / 0 AT4G31160 1723 / 0.0 DDB1-CUL4 associated factor 1 (.1)
Potri.006G280600
[exp]
80 / 2e-15 AT4G20325 318 / 3e-105 unknown protein
PFAM info
Representative CDS sequence
>Lus10006377 pacid=23162671 polypeptide=Lus10006377 locus=Lus10006377.g ID=Lus10006377.BGIv1.0 annot-version=v1.0
ATGGACGGGGAATCGCCCAGCCCTAACGGAGAAACCTCTGCTGCTGAGGTAGCACCGACGCCGGCGGCGGTGGCTCCGCTTCCACTTCCACCTATCTCGG
AAGCGGGGGTTGGGGGTGAGGTGGGACCTCAACGTCACGGGGACGGAGATGGAGACGGAGACGACGACGATGACGATGAGGAGGAAACGAAGAAGGAGGA
AGATGACGAGTTGATTGACAAGGCGCAGAGGTTAATGGAAAAGATTACTGCAGCTCCTGACAACCCTAGTGCTACCGTTCTCCACGCTCTATCTTCTCTC
CTCGAGACTCAGGAGTCTCTATATGTCGAAGAGAATGGACATTCTAGTGCTAATACAACTCGTGCTTCCCATAATATTGGTCGTCTTGGAAACTTAGTTC
GGGACAATGATGAGTTTTTTGACTTAGTATCTTCTAAGATTCTTGCTGAGACAAGATATTCAACTGCCATCCAGGCAGCTGCTGCGAGACTTGTTATGAG
CTGCTGGCTAACATGGATTTATCCTCATGTTTTTGATGAACAAGTTGTGGAGAACATAAAGGGCTGGGTGATGGATGAAACCGTGAGATTTTCTGGTGAA
GAGCGCAATTGGAAACATGGTACAAAGAGGAGAGAGGCAACAGATTCTGAGATGTTGAAGGCCTATTCTACGGGGCTCCTTGCTGTATGTTTGGGCAGTG
GTGGTCAGGTTGTTGAAGATGTGCTTACATCTGGATTGTCTGCAAAGCTCATGCGCTTTCTTCGAATTCGCATTCTGGGGGAAAGTAGCACAAGCCAAAA
AGATGGTAGTTATTCTACAGAAGTCAAAAATGCAAATGCTGCCACATGCAACCGAGGTAGGGCACGCCAGCTTCTTGACGCTACTCGTGATAATTTGAAG
GTTATGGATCAGAGGTCACTAGATTATCAGAGTGGCGATAGAAATGATGATAAAAGCACTGGAGAATTGCCTAATATGTCAGCTGAAGGAATTCACATCT
GCGAGGCTGATGCTGAGGGTGGGGAGAGATGGCACAGTAAAGATCAACGTGATGGAGAGAATAAAGCCGAAGACTTCGATGGGAACGGGAGAGATGATCT
GTTGAGGCGTAAGGTTGCCCGTGGATTGACAAGACTGGGAGGGAGGGGAAGAACAAATGAAGGTATTCTAGAAACTGATCAAGGTTTGACATCTCCAAGT
TCTGGTAGTCGCTCTGTACATGGGAGGAATCCTAGGGACAGGGGATTAATCAGAATTTTGGATGGGAAAAAAGGATCAGAAGCAAAGAATTCTTCAGGAA
GCCTAATTGCTGATGGTTTTACTTGGGAAAGAAAGGAAAACGATGACTGCCTTGGTGAATGCAGAATTGGAACCAAAGACATATCTAATTTGGTAAGAAA
AGCTGTGGGAGCTGCTGAAGCAGAAGCCAGAGCTGCAAATGCACCTCCAGAAGCCATTAAGGCAGCTGGTGATGCTGCTGCTGAAGTTGTCAAGAGTGCT
GCTTTTGAGGAATTTAAATCTACCAATAATGATGAGGCTGCAGTTTTGGCTGCTTCTCTTGTTGCTTCTACAGTGGTCGATGCCGCAAATGCAGTTGAAG
TGTCTAGGAGAACTACCAGTGACACCAATGATTCAGTGGATCTTGAAAGTACAGAGAAAGAAGCAAATGAGGAAACTGAAGAATATTTCATCCCTGATGT
TGAATCCCTTGCAAAGTTGAGGGAAAAATATTGCATACAATGTCTTGAGATATTAGGGGAATATGTTGAAGTTCTTGGGCCTGTTTTGCATGAGAAGGGT
GTAGATGTTTGTCTGTCACTGTTGGAACGCAGTTCAAAGCACAAAGTAGCATCCAAGGCTATGTCACTCTTGCCTGATGTCATGAAGCTTATATGTGCCT
TAGCTGCTCACAGGAAGTTTGCTGCACTGTTTGTGGATAGAGGTGGCATGCAAAAATGTGGATAG
AA sequence
>Lus10006377 pacid=23162671 polypeptide=Lus10006377 locus=Lus10006377.g ID=Lus10006377.BGIv1.0 annot-version=v1.0
MDGESPSPNGETSAAEVAPTPAAVAPLPLPPISEAGVGGEVGPQRHGDGDGDGDDDDDDEEETKKEEDDELIDKAQRLMEKITAAPDNPSATVLHALSSL
LETQESLYVEENGHSSANTTRASHNIGRLGNLVRDNDEFFDLVSSKILAETRYSTAIQAAAARLVMSCWLTWIYPHVFDEQVVENIKGWVMDETVRFSGE
ERNWKHGTKRREATDSEMLKAYSTGLLAVCLGSGGQVVEDVLTSGLSAKLMRFLRIRILGESSTSQKDGSYSTEVKNANAATCNRGRARQLLDATRDNLK
VMDQRSLDYQSGDRNDDKSTGELPNMSAEGIHICEADAEGGERWHSKDQRDGENKAEDFDGNGRDDLLRRKVARGLTRLGGRGRTNEGILETDQGLTSPS
SGSRSVHGRNPRDRGLIRILDGKKGSEAKNSSGSLIADGFTWERKENDDCLGECRIGTKDISNLVRKAVGAAEAEARAANAPPEAIKAAGDAAAEVVKSA
AFEEFKSTNNDEAAVLAASLVASTVVDAANAVEVSRRTTSDTNDSVDLESTEKEANEETEEYFIPDVESLAKLREKYCIQCLEILGEYVEVLGPVLHEKG
VDVCLSLLERSSKHKVASKAMSLLPDVMKLICALAAHRKFAALFVDRGGMQKCG

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT4G31160 DCAF1 DDB1-CUL4 associated factor 1 ... Lus10006377
[exp]
0 1
AT4G32620 Enhancer of polycomb-like tran... Lus10021959
[exp]
5.7 0.9368
AT5G65450 UBP17 ubiquitin-specific protease 17... Lus10015894
[exp]
6.0 0.9395
AT1G55350 EMB80, ATDEK1, ... EMBRYO DEFECTIVE 80, embryo de... Lus10010313
[exp]
6.2 0.9378
Lus10014954
[exp]
6.7 0.9287
AT4G00450 CCT, CRP CRYPTIC PRECOCIOUS, CENTER CIT... Lus10036354
[exp]
7.6 0.9450
AT1G55350 EMB80, ATDEK1, ... EMBRYO DEFECTIVE 80, embryo de... Lus10013411
[exp]
10.7 0.9353
AT1G55350 EMB80, ATDEK1, ... EMBRYO DEFECTIVE 80, embryo de... Lus10010314
[exp]
14.7 0.9350
AT4G38600 UPL3, KAK UBIQUITIN-PROTEIN LIGASE 3, KA... Lus10027841
[exp]
15.4 0.9308
AT3G48050 SUO 'shuttle' in chinese, BAH doma... Lus10042137
[exp]
15.7 0.9186
AT4G28760 Protein of unknown function (D... Lus10011912
[exp]
16.7 0.9138

Lus10006377 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.