Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G05170 1523 / 0 ATVPS11 vacuolar protein sorting 11 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012332 [exp] 1491 / 0 AT2G05170 1196 / 0.0 vacuolar protein sorting 11 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G165400 [exp] 1658 / 0 AT2G05170 1552 / 0.0 vacuolar protein sorting 11 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF00637 [flax] [poplar] Clathrin Region in Clathrin and VPS CL0020 [flax] [poplar] PF12451 [flax] [poplar] VPS11_C Vacuolar protein sorting protein 11 C terminal
Representative CDS sequence Show only first row Show all	>Lus10006378 pacid=23162670 polypeptide=Lus10006378 locus=Lus10006378.g ID=Lus10006378.BGIv1.0 annot-version=v1.0 ATGTACCAGTGGAGGAAATTCGACTTCTTCGAGGAGAAGTACGGCGGTAAGAGCTCGATCCCGGAGGAAGTCAGTGGCGAGATCGAGTGCTGCTCCAGCG GCAGAGGCAAGGTTGTGATCGGCTGCGACGATGGCACCGTCAGCTTCCTTGATCGTGGCCTCAACTTCAATTCCGGATTCCAAGCTCACTCTTCCCCCAT TCTTTTCCTCCAGCAGCTCAAGCAACGGAACTTCCTTCTAACTGTTGGGGAAGATGAGCAGTTGTCTTCACAGCAATCATCCATGTGCCTGAAGGTCTTT GACCTCGATAAGCCACAAACTGAGGGAGCTAGTAGTTCGGCTAATACCCCTGATTCCATTGGCATATTGCGCATTTTCACCAATCAATTCCCTGGGGCGA AGATTACTTCGTTTTTAGTACTAGAAGAGGCGCCTCCAATACTACTGATAGCTATTGGATTAGACAATGGTTGCATTTACTGCATCAAGGGAGACATTGC AAGAGAGCGTATACAACGGTTTATGCTGCAGGTAGATACTGCTTCTTCAGACCGAAGCCAATCATCTGTTACTGGTCTTGGGTTTAGAGTGGATGGCCAG ACCCTTCAATTGTTTGCTGTAACTCCTGGTTCTGTGAGTCTGTTCAGCTTGCATAATCAACCACCGAGGAGGCAGACCCTCGATCAGATTGGTTCCGGTG TAAATAGCGTTGCAATGAGTGATCGATCAGAGCTAATCATTGGTAGACCTGAGGCTGTCTATTTCTATGAGGTTGATGGGCGTGGTCCTTGTTGGGCATT TGAGGGGGAGAAGAAATTCGTAGGGTGGTTCCGTGGTTATCTTTTGTGTGTTATATCTGACCAGAGGAGTGGCAAGGATAGTTTCAATGTTTATGATCTG AAGAACCGGTTAATAGCCCACAGTATTGTGGTGAAAGAAGTTTCTCAAATGCTTTGTGAGTGGGGTAATATTATACTTATCATGAGTGACAAATCAGCAT TGTGTATTGGTGAGAAAGACATGGAAAGCAAGTTAGACATGCTTTTCAAGAAAAATCTGTATACTGTGGCCATCAATCTGGTTCAGAGCCAGCAGGCTGA TGCTGCTGCAACTGCTGAGGTTCTCAGAAAGTATGGAGATCATCTTTATAGCAAGCAAGATTATGACGAGGCTATGGCTCAATACATTAGTACTATTGGT CACCTTGAGCCTTCATATGTGATACAGAAGTTCCTGGATGCACAGAGAATATACAACCTTACAAATTATTTGGAAAATTTGCATGAGAAGGGGCTTGCTT CAAAAGACCATACAACTCTTCTCTTAAATTGTTATACTAAATTGAAAGATGTTGAGAAGCTGAATGTTTTTATCAAGAATGAGGATGCTGTGGGGGAGCA CAAGTTTGACGTGGAGACGGCTATACGGGTTTGCCGTGCTGCCAATTACCACGAGCATGCAATGTATGTTGCTAAAAAGGCTGGAAGACATGAATGGTAC TTAAAGATCTTACTCGAGGACCTAGGCAGATATGATGAAGCCTTGCAATACATTTGTAGCCTCGAATCTAGTCAGGCTGGTGTGACAGTAAAAGAATACG GTAAAATTCTTCTAGAGCACAAACCAGTTGAAACTATTCAGATACTCATGAGGCTTTGCACCGAAGATGAATCAGTAGACAAGGGAACATCAAGTAGTGG ATACTTATCTATGCTGCCATCTCCTGTTGATTTCCTGAACATTTTCATCCATTATCCTCAGTCCCTCATGGTCTTTCTTGAAAAATATACTGACAAGGTG AAGGATTCTCCTGCCCAAGTTGAAATCCATAACACTCTTTTAGAGTTGTACCTTTCCAATGATCTGGACTTTCCTGCAATGTCACAAGCTAGTAATGGTG TAGATCTTCCACTTGAATCTAGATCAGGGCCTGCTACGATTTCAACTAAACCCAACGGGAGATCAACTGGTACTGATAAAGACAGTTCTGCAGGAAAAGA TCGTACAGAAAGGCGTCAGAAGGGCTTGCTCTTGCTCAAGAGTGCATGGCCATCTGACCAGGAGCAACCACTTTATGATGTCGATCTTGCTATAATTCTT TGTGAGATGAATGGATTTACAGAAGGGCTTTTGTATCTCTATGAGAAAATGAAACTCTATAAGGAGGTCATTGCCTGCTATATGCAGGCTCATGACCATG AAGGATTGATTGCATGCTGCAAAAAGCTGGGTGATTCTGGCAAGGGAGGTGACCCAACTCTCTGGGCTGATCTGCTTAAATACTTTGGTGAGCTTGGGGA AGATTGCTCCAAAGAAGTGAAGGAAGTGCTAACTTATATTGAAAGGGATGATATCTTCCCTCCCATTATTGTTCTCCAGGCCTTATCAAGGAATCCATGC CTTACACTCTCTGTTATCAAGGATTATGTTGCCCGGAAACTTGAACAAGAGTCGAAGCTGATCGAGGAGGACCGCCGAGCTAGTGAGAAGTATCAGGATG AGACAACAGCGATGAGAAAAGAAATTCAAGATCTGAGGACAAATGCCAGGATATTTCAGCTGAGCAAGTGCACTGCTTGCACTTTCACCCTTGATCTTCC CGCTGTCCACTTTATGTGCATGCACTCTTTCCATCAGCGTTGCCTTGGGGATAACGAGAAAGAATGCCCTGAATGTGCTCCTGAGTATAGATCTGTTCTT GAGATGAAGAGAAACCTGGAGCAGAACTCCAATGACCAGGACCGGTTTTTCCAACAGGTGAAGAGCTCCAATGATGGCTTTTCGGTAATTGCCGAGTACT TTGGGAAGGGAATTATTAGCAAAACTAGCAACGGAGCCACCGCTGCAACTCTTGGATCAGCCAGCACGACAACTGGAAATGGGTTCTAG
AA sequence Show only first row Show all	>Lus10006378 pacid=23162670 polypeptide=Lus10006378 locus=Lus10006378.g ID=Lus10006378.BGIv1.0 annot-version=v1.0 MYQWRKFDFFEEKYGGKSSIPEEVSGEIECCSSGRGKVVIGCDDGTVSFLDRGLNFNSGFQAHSSPILFLQQLKQRNFLLTVGEDEQLSSQQSSMCLKVF DLDKPQTEGASSSANTPDSIGILRIFTNQFPGAKITSFLVLEEAPPILLIAIGLDNGCIYCIKGDIARERIQRFMLQVDTASSDRSQSSVTGLGFRVDGQ TLQLFAVTPGSVSLFSLHNQPPRRQTLDQIGSGVNSVAMSDRSELIIGRPEAVYFYEVDGRGPCWAFEGEKKFVGWFRGYLLCVISDQRSGKDSFNVYDL KNRLIAHSIVVKEVSQMLCEWGNIILIMSDKSALCIGEKDMESKLDMLFKKNLYTVAINLVQSQQADAAATAEVLRKYGDHLYSKQDYDEAMAQYISTIG HLEPSYVIQKFLDAQRIYNLTNYLENLHEKGLASKDHTTLLLNCYTKLKDVEKLNVFIKNEDAVGEHKFDVETAIRVCRAANYHEHAMYVAKKAGRHEWY LKILLEDLGRYDEALQYICSLESSQAGVTVKEYGKILLEHKPVETIQILMRLCTEDESVDKGTSSSGYLSMLPSPVDFLNIFIHYPQSLMVFLEKYTDKV KDSPAQVEIHNTLLELYLSNDLDFPAMSQASNGVDLPLESRSGPATISTKPNGRSTGTDKDSSAGKDRTERRQKGLLLLKSAWPSDQEQPLYDVDLAIIL CEMNGFTEGLLYLYEKMKLYKEVIACYMQAHDHEGLIACCKKLGDSGKGGDPTLWADLLKYFGELGEDCSKEVKEVLTYIERDDIFPPIIVLQALSRNPC LTLSVIKDYVARKLEQESKLIEEDRRASEKYQDETTAMRKEIQDLRTNARIFQLSKCTACTFTLDLPAVHFMCMHSFHQRCLGDNEKECPECAPEYRSVL EMKRNLEQNSNDQDRFFQQVKSSNDGFSVIAEYFGKGIISKTSNGATAATLGSASTTTGNGF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G05170		ATVPS11	vacuolar protein sorting 11 (....		Lus10006378 [exp]	0	1
AT1G77280			Protein kinase protein with ad...		Lus10028661 [exp]	2.2	0.8570
AT4G36630		EMB2754	EMBRYO DEFECTIVE 2754, Vacuola...		Lus10014310 [exp]	2.6	0.8823
AT4G36630		EMB2754	EMBRYO DEFECTIVE 2754, Vacuola...		Lus10026018 [exp]	4.2	0.8719
AT5G06560			Protein of unknown function, D...		Lus10015990 [exp]	5.3	0.8190
AT1G26830		CUL3A, ATCUL3A,...	cullin 3A, cullin 3 (.1)		Lus10030485 [exp]	5.5	0.8260
AT5G19420			Regulator of chromosome conden...		Lus10016335 [exp]	6.0	0.8374
AT2G20190		ATCLASP	CLIP-associated protein (.1)		Lus10011907 [exp]	7.7	0.8587
AT4G32350			Regulator of Vps4 activity in ...		Lus10023635 [exp]	8.0	0.8400
AT1G13940			Plant protein of unknown funct...		Lus10030419 [exp]	11.2	0.8460
AT2G20190		ATCLASP	CLIP-associated protein (.1)		Lus10022839 [exp]	12.1	0.8615

Compare expression of checked genes

Lus10006378 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.