Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G05160 467 / 1e-160 C3HZnF CCCH-type zinc fingerfamily protein with RNA-binding domain (.1) AT3G52980 367 / 1e-123 Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.1) AT3G51950 231 / 3e-69 C3HZnF Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.1), Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.2) AT3G21100 145 / 2e-39 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT5G12440 149 / 1e-38 C3HZnF CCCH-type zinc fingerfamily protein with RNA-binding domain (.1.2.3) AT3G63450 142 / 3e-37 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3) AT1G51520 132 / 6e-34 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT1G51530 63 / 2e-10 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012333 [exp] 1024 / 0 AT2G05160 488 / 2e-168 CCCH-type zinc fingerfamily protein with RNA-binding domain (.1) Lus10039575 [exp] 220 / 1e-64 AT3G51950 427 / 3e-144 Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.1), Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.2) Lus10005319 [exp] 212 / 1e-61 AT3G51950 420 / 2e-141 Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.1), Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.2) Lus10019044 [exp] 164 / 7e-44 AT3G51950 341 / 4e-110 Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.1), Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.2) Lus10027351 [exp] 143 / 7e-39 AT3G21100 235 / 6e-77 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10005023 [exp] 149 / 1e-38 AT3G21100 380 / 4e-125 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10019042 [exp] 145 / 2e-37 AT3G21100 368 / 6e-120 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10009964 [exp] 140 / 5e-37 AT3G51950 215 / 3e-64 Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.1), Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.2) Lus10014915 [exp] 143 / 8e-37 AT3G21100 384 / 7e-127 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G165500 [exp] 645 / 0 AT2G05160 513 / 8e-178 CCCH-type zinc fingerfamily protein with RNA-binding domain (.1) Potri.002G221100 [exp] 616 / 0 AT2G05160 469 / 1e-160 CCCH-type zinc fingerfamily protein with RNA-binding domain (.1) Potri.001G255532 [exp] 224 / 3e-65 AT3G51950 347 / 8e-112 Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.1), Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.2) Potri.003G204300 [exp] 170 / 1e-45 AT3G51950 342 / 1e-109 Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.1), Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.2) Potri.001G020300 [exp] 170 / 2e-45 AT3G51950 330 / 1e-104 Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.1), Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.2) Potri.009G050700 [exp] 168 / 6e-45 AT3G51950 362 / 4e-117 Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.1), Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.2) Potri.009G050600 [exp] 164 / 2e-43 AT3G21100 360 / 4e-116 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.001G255400 [exp] 161 / 1e-42 AT3G21100 338 / 2e-107 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.014G161600 [exp] 44 / 0.0003 AT3G07810 498 / 3e-174 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.002G115000 [exp] 43 / 0.0004 AT1G58470 219 / 7e-69 RNA-binding protein 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [flax] [poplar] RRM PF00076 [flax] [poplar] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Lus10006379 pacid=23162638 polypeptide=Lus10006379 locus=Lus10006379.g ID=Lus10006379.BGIv1.0 annot-version=v1.0 ATGGATTTTACAGAGTCAACAAAAATAGTATACAGCAGGATTCAAGAGGTAGACCCTGATAATGTGTCCAAGATCATAGGTTACCTCCTTTTACATGATC ACGGCGAAGGCGATATGATTCGCAGGGCGTTTAGCCCCGATAGCCTGATTCATTCCTTGGTTCTCAAGGTTAAAACTGATCTTGGTTTGATGAACAAGCA ACCTACTGCTCTTCCTCTTGGCTTGATGACACCAGCTGTTTCAGAAGTTCCTCTTCAGTATGCTCCTTACTCGCCGGTGCATAGCTTGGACTACGTTCCA GAGGAATTTAGGGTTCGAAACCGAATGCAATTTAACACAATGGATGATAGGTTACCAGAGTTTGTTACTAGTTCAGGTAATCCTGACTTTCAAGGGAATT TCTTTTACCCTACAAGCAGAATACGGTCTCCAGGCTTGCCGGAATTACCGGTTAAGATTTGCCATTACTTCAGTAAGGGTCACTGTAAACATGGAAGAAA CTGCAGGTTCTTCCATGGACATCATCGGCTCGAGGTGGAGCTTACGGAGCTCCTGAAATCTAGGAGAGGCATGCCTGTCTCTATTGCCTCTTTACCAATG ATGTACTATGAGAAGTATGGAAGGACTCTTCAGGCTGAAGGATATCTCACTGAGAGCCAACGACATGGCAAGGCCGGGTATAGTTTGACAAAGCTTCTTG CACGATTAAGCAATAGCATTCGTCTTCTTGACAGGCCTCATGGACAGCATTCAGTGATTTTGGCAGAAGATGTGTCGAAGTACTTGGAATATTCCGGTGA AAGAAACGATCCTGGCGGAATCGTTGCTGGTTCTAGACAAATATATCTCACATTTCCTGCTGAGAGTACCTTCACTGAGCAAGATGTTTCAAACTATTTC ATCAAATTCGGGGCAGTCCAAGACGTAAGGATCCCTTGCCAACAGAAAAGGATGTTTGGATTCGTCACCTTTGTTTTCGCGGAGACAGTCAAGCATATCC TCGCCAAAGGAAATCCCCATTTCGTATGCGGTGCTCGTGTGCTTGTGAAGCCTTACAGGGAGAAATCGAGACTTTTTGATAGGAAATTCTCAGAGAAAAT GCATCAGTCCATGTATCACAGCACACACTATATTGATGGAGGAGACTCTGAGCTTCATCAAAGTTATAACTCTTTCTCATCGCCCCGAGTTTGTGATAAC TCGAGGCTGCTGAGGAAGCAACTCATGGAGGAACACGAGCAAGCGCTCAAGCTGGAAAGAAGGTGTCGCTCGGAGATGCATTTAGCCACAAAGGAACCAC ATTTGAACAATAACCATTCTTATTTCGGATACTCAATGAATGGCCTCGAGCATTCAGGCGCTTCAGAGTCACCAGCTGATTTCCCATCTGCAGAGCGACT GAACTACCTGCTAGATGTTCTGAGCATCAGCGAGGACAAGGTTAGGAACGCTAGCACGAATTACAACAATCAAGATAGCAGCAGCCAAGGACTCAATCTA CCAGAGAGCCCATTTGCAGCTCAAGTAGGTAGTGGCATTTCGACGGTGATGTAG
AA sequence Show only first row Show all	>Lus10006379 pacid=23162638 polypeptide=Lus10006379 locus=Lus10006379.g ID=Lus10006379.BGIv1.0 annot-version=v1.0 MDFTESTKIVYSRIQEVDPDNVSKIIGYLLLHDHGEGDMIRRAFSPDSLIHSLVLKVKTDLGLMNKQPTALPLGLMTPAVSEVPLQYAPYSPVHSLDYVP EEFRVRNRMQFNTMDDRLPEFVTSSGNPDFQGNFFYPTSRIRSPGLPELPVKICHYFSKGHCKHGRNCRFFHGHHRLEVELTELLKSRRGMPVSIASLPM MYYEKYGRTLQAEGYLTESQRHGKAGYSLTKLLARLSNSIRLLDRPHGQHSVILAEDVSKYLEYSGERNDPGGIVAGSRQIYLTFPAESTFTEQDVSNYF IKFGAVQDVRIPCQQKRMFGFVTFVFAETVKHILAKGNPHFVCGARVLVKPYREKSRLFDRKFSEKMHQSMYHSTHYIDGGDSELHQSYNSFSSPRVCDN SRLLRKQLMEEHEQALKLERRCRSEMHLATKEPHLNNNHSYFGYSMNGLEHSGASESPADFPSAERLNYLLDVLSISEDKVRNASTNYNNQDSSSQGLNL PESPFAAQVGSGISTVM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G05160	C3HZnF		CCCH-type zinc fingerfamily pr...		Lus10006379 [exp]	0	1
AT2G05160	C3HZnF		CCCH-type zinc fingerfamily pr...		Lus10012333 [exp]	1.0	0.9656
AT5G49650		XK2, XK-2	XYLULOSE KINASE 2, xylulose ki...		Lus10028235 [exp]	2.8	0.9170
AT5G47040		LON2	lon protease 2 (.1)		Lus10001083 [exp]	3.9	0.9153
AT1G15060			Uncharacterised conserved prot...		Lus10013496 [exp]	6.0	0.8919
AT1G03090		MCCA	methylcrotonyl-CoA carboxylase...		Lus10042623 [exp]	8.9	0.9084
AT1G58848			Disease resistance protein (CC...		Lus10028076 [exp]	10.6	0.8610
AT2G15230		ATLIP1	lipase 1 (.1)		Lus10027861 [exp]	10.7	0.8517
AT5G04980			DNAse I-like superfamily prote...		Lus10034857 [exp]	11.2	0.8180
AT2G35800		SAMTL	S-adenosyl methionine transpor...		Lus10023493 [exp]	11.2	0.8961
AT3G10740		ATASD1, ARAF1, ...	ARABIDOPSIS THALIANA ALPHA-L-A...		Lus10038988 [exp]	11.4	0.8761

Compare expression of checked genes

Lus10006379 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.