Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G05230 395 / 6e-127 DNAJ heat shock N-terminal domain-containing protein (.1) AT2G05250 395 / 6e-127 DNAJ heat shock N-terminal domain-containing protein (.1) AT5G35753 377 / 3e-121 Domain of unknown function (DUF3444) (.1) AT5G53150 242 / 3e-69 DNAJ heat shock N-terminal domain-containing protein (.1) AT2G25560 171 / 9e-45 DNAJ heat shock N-terminal domain-containing protein (.1) AT5G50115 157 / 4e-41 unknown protein AT5G18750 150 / 4e-37 DNAJ heat shock N-terminal domain-containing protein (.1) AT5G18740 134 / 2e-33 Domain of unknown function (DUF3444) (.1) AT5G37440 129 / 4e-33 Chaperone DnaJ-domain superfamily protein (.1) AT5G27240 135 / 1e-32 DNAJ heat shock N-terminal domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012334 [exp] 1381 / 0 AT5G35753 414 / 3e-134 Domain of unknown function (DUF3444) (.1) Lus10001744 [exp] 421 / 4e-140 AT2G05250 322 / 5e-103 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10001171 [exp] 375 / 3e-123 AT2G05250 308 / 2e-98 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10014927 [exp] 252 / 2e-73 AT5G53150 535 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10038816 [exp] 251 / 5e-73 AT5G53150 540 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10008983 [exp] 218 / 1e-60 AT5G53150 509 / 3e-172 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10028842 [exp] 205 / 3e-56 AT5G53150 498 / 3e-167 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10039019 [exp] 160 / 7e-42 AT2G35540 380 / 7e-126 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10037161 [exp] 158 / 2e-39 AT5G27240 335 / 6e-100 DNAJ heat shock N-terminal domain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G165600 [exp] 509 / 4e-171 AT2G05230 730 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.002G221000 [exp] 484 / 4e-161 AT2G05230 696 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.003G171200 [exp] 268 / 2e-78 AT5G53150 311 / 6e-95 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.001G057200 [exp] 266 / 1e-77 AT5G53150 318 / 1e-97 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.012G001100 [exp] 265 / 4e-77 AT5G53150 570 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.015G097500 [exp] 261 / 1e-75 AT5G53150 487 / 4e-162 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.015G020200 [exp] 257 / 1e-74 AT5G53150 574 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.012G098800 [exp] 253 / 8e-73 AT5G53150 282 / 5e-84 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.010G018800 [exp] 172 / 2e-44 AT5G18750 446 / 3e-142 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.005G043200 [exp] 160 / 3e-40 AT5G27240 416 / 4e-127 DNAJ heat shock N-terminal domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0392 [flax] [poplar] Chaperone-J PF00226 [flax] [poplar] DnaJ DnaJ domain CL0392 [flax] [poplar] PF11926 [flax] [poplar] DUF3444 Domain of unknown function (DUF3444)
Representative CDS sequence Show only first row Show all	>Lus10006380 pacid=23162632 polypeptide=Lus10006380 locus=Lus10006380.g ID=Lus10006380.BGIv1.0 annot-version=v1.0 ATGGAACCAAACATAGCAGAGGCCATCACAGCGAAGGAGATTGCCGAGAGGAGATTTGCTGCCAAGGATTTCGTCGGAGCCAAGACTTATGCTTTGAAGG CTAAATCTCTGTGTCCTGGACTAGAAGGTTTATCTCAGATGGTTGCCACTTTCCAAGTCTATATGGCCTCTGAGGTAAAATCCAATGGCGAAATCGACTA TTACTCGGTTCTCGGGTTGAACCCTACTGGAGATAGAGATGCTGTTAAAAAGCAGTATAGGAAGATGGCCGTGTTGCTCCACCCGGACAAGAACAAAACT TCCGGCGCTGATGGTGCTTTCAAACTCGTATCCGAAGCATGGACCGTACTGTCTGATAGTCTCAAAAGAAAGAAGCAGTACTCATCAATGCTTACGCCTG GAGTTGTTGCAGGATATAGCAGTTGTTCCGGTGCAGCATCAGCATCAGCTTCACACGGGCTCGACAGTTTCTGGACTGTCTGCACCTCTTGTCAAGTTCG GTATGAGTACTTGCGCAAGTATGTGAACAAGCGCCTTTCGTGCAAGAACTGCCGAGGTACTTTCGTTGCTGTGGAGACTGGGACGGCTCCGGTAACTGGT TCTTTCCCGTATAGTTCTTGGTCTTATCTGCGTGGAAATGGTTACGGAAGTCATGGATATGATGGAGCCTCGTATGGAGGCTCGGGATTACACACTACTA CTCATGCGTACGATTATGCTTCGAATGATGTATCGTCGTTTCACTGGGGATCTTACTCCGGAACTTCCAGTGTCTTGTGTCCTAATACTGAAACTTGTAA TCAGGTCAACGGAAAAGTCCGTACTGGAAGAAAAGTCAAATCAGCTTCCAAGGAAAAACCATCCCCTAAACCTGCTGTGTCTAACGTGAGCACAATACCG GCAGCCAAGAAAGTCGTAACCTATCTCACAAAGGCCGGTAAACCCGACAAGAGGAGGAAGATTGTCGTTGGAGCGGATTTTCGAAATGGATACGATCCCT TGAACACGGGAAACGGAGTCTCTCATACGTACGAGTATGCTCCTAGTAATGTATCGCCTTTTCAGTGGGGATCTTACTCCGGAACTTCTAATGGAGCATC TGCTGAAACTTTTAATCAGGACAACGGAGAACTCCGTAATGGAAGAAAAGTCAAATTAGCTTCCAAGGAAAAACCATCCCCTAAACCTGCCGTGTCGAAT GGCAGCACAATGCCTGAAGCCAAGAAAGTCGTAAGCTATCTTACAAAGGCTGGTAAACCCGATAAGAGGAGGAAATTTGGTCTTGGTGCGAATTTTCGAA ATGGATATGAAGAAGTGCAGCACAAACCTCGGTCAGCAGCAGGAGTTTCTGATGTACCTGTAAAAGCTGACTACCTTGAACCACCCAAGCTTTCCGGTCC GGTTGAAGTCACAACTAAGCGCTGGCCGATTCCTCCTCCTTTCGATCTTCGCAAGTTTTTGATTGAGAAGGCAAGGAGCGATATCAAGATCAGGCTGGAA CAAATGGAGGCAGCAAGGCAATCAGTACAGGTTGCTGCTGCTATACCTAAAGCAGATTCGGAAATGTCCGGTCGAGTAAGCAAGCAACATAAAACCGGAC CGGTTTCGATAACCGTGCCTGATCCAGACTTCCATGATTTCGACAAAGACAGATCGGAGGAATGTTTCACCCCTAAGCAGATATGGGCATTGTACGACGA AGATGATGGCATGCCACGGCTTTACTGTTTGATTAGGGAGGTGGTCTCTGTCAAGCCTTTTAAGATCCTAATCACATACTTGAACTCGAAAACCGACACA GAGTTCGGTTCGATGAACTGGATTGGTCACGGGTTCACCAAATCATGCGGACACTTCAGGGCATGGAGTTCTGACACCGTCGATCAAGTGAATGTCTTTT CTCATCTGCTAAAAGGCCAAAAGGCCGGCAGAGGAGGGTGTGTAAGAATATTTCCGAGATGCGGGGAGATATGGGCGGTTTATCGGAACTGGTCTCAAGA TTGGAACGGTTCGACACCGGATGATGTGAGGCACCAGTACGAGATGGTGGAAGTGGTGGACGATTATTTCGAGGACAGAGGGGTTTGCGTTGCTCCCCTT GTGAAGATGGCCGGTTTCAAGACGGTGTATCAACGGGACTCGAGCCAGGACGTGATGAAATGGATCCCGAGGGCTGAGATGTTTCGCTTTTCGCACCAGG TTCCGTCTTGGTCCCTTAATGGGAGAGCGAACAACGATCTGCCGAATAATTGTTGGGATCTCGACCCGGCTGCAACTCCTGATGATCTGCTCCACACTGC AACAATAACAACAGAAGCACCCACAGAAGAAGCAAAAGCTTAA
AA sequence Show only first row Show all	>Lus10006380 pacid=23162632 polypeptide=Lus10006380 locus=Lus10006380.g ID=Lus10006380.BGIv1.0 annot-version=v1.0 MEPNIAEAITAKEIAERRFAAKDFVGAKTYALKAKSLCPGLEGLSQMVATFQVYMASEVKSNGEIDYYSVLGLNPTGDRDAVKKQYRKMAVLLHPDKNKT SGADGAFKLVSEAWTVLSDSLKRKKQYSSMLTPGVVAGYSSCSGAASASASHGLDSFWTVCTSCQVRYEYLRKYVNKRLSCKNCRGTFVAVETGTAPVTG SFPYSSWSYLRGNGYGSHGYDGASYGGSGLHTTTHAYDYASNDVSSFHWGSYSGTSSVLCPNTETCNQVNGKVRTGRKVKSASKEKPSPKPAVSNVSTIP AAKKVVTYLTKAGKPDKRRKIVVGADFRNGYDPLNTGNGVSHTYEYAPSNVSPFQWGSYSGTSNGASAETFNQDNGELRNGRKVKLASKEKPSPKPAVSN GSTMPEAKKVVSYLTKAGKPDKRRKFGLGANFRNGYEEVQHKPRSAAGVSDVPVKADYLEPPKLSGPVEVTTKRWPIPPPFDLRKFLIEKARSDIKIRLE QMEAARQSVQVAAAIPKADSEMSGRVSKQHKTGPVSITVPDPDFHDFDKDRSEECFTPKQIWALYDEDDGMPRLYCLIREVVSVKPFKILITYLNSKTDT EFGSMNWIGHGFTKSCGHFRAWSSDTVDQVNVFSHLLKGQKAGRGGCVRIFPRCGEIWAVYRNWSQDWNGSTPDDVRHQYEMVEVVDDYFEDRGVCVAPL VKMAGFKTVYQRDSSQDVMKWIPRAEMFRFSHQVPSWSLNGRANNDLPNNCWDLDPAATPDDLLHTATITTEAPTEEAKA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G35753			Domain of unknown function (DU...		Lus10006380 [exp]	0	1
AT4G11130		SMD1, RDR2	SILENCING MOVEMENT DEFICIENT 1...		Lus10042134 [exp]	1.0	0.9425
AT3G23780		NRPE2, DMS2, DR...	DEFECTIVE IN MERISTEM SILENCIN...		Lus10039677 [exp]	1.4	0.9319
AT5G35753			Domain of unknown function (DU...		Lus10012334 [exp]	2.4	0.9117
AT3G56850	bZIP	DPBF3, AREB3	ABA-responsive element binding...		Lus10008928 [exp]	6.2	0.8815
AT5G01310	bHLH	APTX, bHLH140	APRATAXIN-like (.1)		Lus10003385 [exp]	7.7	0.8951
AT1G08060		MOM1, MOM	MORPHEUS MOLECULE 1, MORPHEUS ...		Lus10016103 [exp]	7.9	0.9235
AT1G51350			ARM repeat superfamily protein...		Lus10027364 [exp]	8.2	0.8838
AT3G12640			RNA binding (RRM/RBD/RNP motif...		Lus10037701 [exp]	9.4	0.9075
AT1G05460		SDE3	SILENCING DEFECTIVE, P-loop co...		Lus10010577 [exp]	10.2	0.9007
AT2G30470	B3	HSI2, VAL1	VP1/ABI3-LIKE 1, high-level ex...		Lus10011245 [exp]	11.8	0.9038

Compare expression of checked genes

Lus10006380 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.