Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G48170 130 / 6e-39 SNE, SLY2 SNEEZY, SLEEPY2, F-box family protein (.1) AT4G24210 59 / 3e-11 SLY1 SLEEPY1, F-box family protein (.1) AT5G44220 39 / 0.0009 F-box family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012335 [exp] 224 / 6e-76 AT5G48170 145 / 6e-45 SNEEZY, SLEEPY2, F-box family protein (.1) Lus10001172 [exp] 160 / 2e-50 AT5G48170 164 / 2e-52 SNEEZY, SLEEPY2, F-box family protein (.1) Lus10001745 [exp] 115 / 1e-32 AT5G48170 114 / 1e-32 SNEEZY, SLEEPY2, F-box family protein (.1) Lus10042637 [exp] 56 / 9e-10 AT4G24210 186 / 6e-61 SLEEPY1, F-box family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G165700 [exp] 144 / 2e-44 AT5G48170 144 / 9e-45 SNEEZY, SLEEPY2, F-box family protein (.1) Potri.002G122300 [exp] 61 / 5e-12 AT4G24210 185 / 2e-60 SLEEPY1, F-box family protein (.1) Potri.014G022100 [exp] 60 / 1e-11 AT4G24210 182 / 1e-59 SLEEPY1, F-box family protein (.1) Potri.002G054500 [exp] 45 / 9e-06 AT2G27310 122 / 2e-31 F-box family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0271 [flax] [poplar] F-box PF00646 [flax] [poplar] F-box F-box domain
Representative CDS sequence Show only first row Show all	>Lus10006381 pacid=23162649 polypeptide=Lus10006381 locus=Lus10006381.g ID=Lus10006381.BGIv1.0 annot-version=v1.0 ATGCCGACAGTCAGGCGGCAGCGGAGGCGGCGGAGACAGGAAAACAACCAAGAGACCTATAACGTCATCAGCAGCATCAACCACCACGTGGACGTCCTAA CCGAGGTGCTGAAGCGGCTCGACTGGCGGTCTCTGTTCTCGGCGGCCTGCGTCTGCCGCCTGTGGAGCAGCATTGTCCGCAACGACGATGCGCTCTGGGA GGAGCTCTGCTTCCGCCACGTGTCTCCCCGGCCGTCGCCCTGGGTGCTGAGGCCCGTGGTGGGTGCTCTGGGTGGATACAAGCAGCTTTACATGGTCTAC ATACGGCCCGTAGTGTTCAGGGTTGGATCGGTGGAGCGGCGGGTTTGGACCGNNNNNNNNNNNNNNNNNNNGCGGGTTTGGACCGCCGACGAGGTCCAGC TGTACTTGTCTTTGTTCTGCGTTGATTATTACGAAAGGCTCGCCGGCAGTGGCGGAATTGGTGGGACCGAGTCGTCGTCGCCGTCGTCCCTCGCGTTCTT GATGTCCAGTCCTGTCAACGTTTGA
AA sequence Show only first row Show all	>Lus10006381 pacid=23162649 polypeptide=Lus10006381 locus=Lus10006381.g ID=Lus10006381.BGIv1.0 annot-version=v1.0 MPTVRRQRRRRRQENNQETYNVISSINHHVDVLTEVLKRLDWRSLFSAACVCRLWSSIVRNDDALWEELCFRHVSPRPSPWVLRPVVGALGGYKQLYMVY IRPVVFRVGSVERRVWTXXXXXXXRVWTADEVQLYLSLFCVDYYERLAGSGGIGGTESSSPSSLAFLMSSPVNV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G48170		SNE, SLY2	SNEEZY, SLEEPY2, F-box family ...		Lus10006381 [exp]	0	1
AT5G11320		YUC4	YUCCA4, Flavin-binding monooxy...		Lus10013125 [exp]	3.6	0.9240
AT3G05470			Actin-binding FH2 (formin homo...		Lus10015175 [exp]	4.0	0.9038
AT3G19210		ATRAD54, CHR25	homolog of RAD54 (.1.2)		Lus10014047 [exp]	5.3	0.9134
AT1G71760			unknown protein		Lus10004010 [exp]	6.7	0.8868
AT4G03270		CYCD6;1	Cyclin D6;1 (.1)		Lus10033736 [exp]	11.1	0.9039
AT5G60370			unknown protein		Lus10023343 [exp]	14.3	0.8618
AT1G14430			glyoxal oxidase-related protei...		Lus10013275 [exp]	15.5	0.9008
AT3G05470			Actin-binding FH2 (formin homo...		Lus10031496 [exp]	17.9	0.8672
AT1G14430			glyoxal oxidase-related protei...		Lus10013274 [exp]	18.3	0.8887
AT3G28857	bHLH	PRE5	Paclobutrazol Resistance 5, ba...		Lus10030675 [exp]	18.4	0.7783

Compare expression of checked genes

Lus10006381 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.