Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G07750 331 / 3e-114 3'-5'-exoribonuclease family protein (.1.2) AT3G60500 54 / 5e-08 G3, CER7 ECERIFERUM 7, 3'-5'-exoribonuclease family protein (.1.2.3) AT1G60080 48 / 3e-06 3'-5'-exoribonuclease family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012336 [exp] 392 / 4e-138 AT3G07750 340 / 6e-118 3'-5'-exoribonuclease family protein (.1.2) Lus10001173 [exp] 368 / 1e-128 AT3G07750 466 / 6e-168 3'-5'-exoribonuclease family protein (.1.2) Lus10001747 [exp] 365 / 2e-127 AT3G07750 462 / 2e-166 3'-5'-exoribonuclease family protein (.1.2) Lus10009708 [exp] 59 / 1e-09 AT3G60500 476 / 3e-166 ECERIFERUM 7, 3'-5'-exoribonuclease family protein (.1.2.3) Lus10021789 [exp] 52 / 3e-07 AT1G60080 439 / 7e-157 3'-5'-exoribonuclease family protein (.1) Lus10036022 [exp] 45 / 6e-05 AT3G60500 439 / 4e-150 ECERIFERUM 7, 3'-5'-exoribonuclease family protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G166200 [exp] 366 / 5e-128 AT3G07750 422 / 3e-150 3'-5'-exoribonuclease family protein (.1.2) Potri.009G047500 [exp] 69 / 4e-13 AT3G60500 548 / 0.0 ECERIFERUM 7, 3'-5'-exoribonuclease family protein (.1.2.3) Potri.001G253200 [exp] 67 / 4e-12 AT3G60500 526 / 0.0 ECERIFERUM 7, 3'-5'-exoribonuclease family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0329 [flax] [poplar] S5 PF01138 [flax] [poplar] RNase_PH 3' exoribonuclease family, domain 1 CL0329 [flax] [poplar] PF03725 [flax] [poplar] RNase_PH_C 3' exoribonuclease family, domain 2
Representative CDS sequence Show only first row Show all	>Lus10006382 pacid=23162625 polypeptide=Lus10006382 locus=Lus10006382.g ID=Lus10006382.BGIv1.0 annot-version=v1.0 ATGTCTAAAACGACGTCGCAGGATCTCAAGTTCTGCTCTTTCTCTCTCGCCGTTCTTCTCAAAACTCCTACACTGGAATTTTCTCAGCTGTCAAAGATCC CAGCCGACCCCAGCCGGATTTTCCAGAAAATTATCAGTCAAAGTTGCAAGCAAAAAATGGTAGGACTTTCGCTGGGAGAAAAACATTTCATTGCAGGCGG GATTGATCACAACATCCGTAGTGATGGCCGGGAAAGAGACTCTTACAGACCAATTCTCGTCGAGACCAGTGTCATCCCTCAGGCAAATGGCTCGGCTCGA GTTAGGATGGGGGCAACAGAAGTTATTGCCAGCGTAAAGGCAGAGCTTGGAAAGCCAAGTGCTTTGCATCCTGCCAAGGGGAAAGTTTTCATACATGTAG ATTGCAGTGCCGGAAGGGGAGGTGAGGACTTATCTGCCGAACTTTCAGTTGCTCTCCAACGATGCCTCTTAGGTAGCACCGATGGAGCAGGTGCAGGAAT TGATATGACTCTTCCCGTGAAGGCTGCATTGGCTAATGCCGCCATCCCAAGAGTCAATGTCTCTGCTGCTGCATCAGGAGGCAAGCAGCCAGAAGTGGAT ATAAGCGAGGACGAGTTTCTGCAGTTTGATACTTCTGGAGTCCCCGTGATAATCACGCTAACAAAGGTAGGAGGGCACTACATTATGGATGCAACATCAG ATGAGGAATCCCAGATGAGCTCAGCTGTTTCTGTTTCGGTCCATAGGAAAGGGCTCATCTGTGGGTTGACCAAGCGAGGAGGTATAGGCCTTGATCCAAG TGTTATTTCTGATATGATTTCTTTCGCGCAACGCTTGAGCGAACAGCTGATGACCAAGTTGGATTCCGGAATCTCGGCTGCAGAGGCCGAAGTAGACGAA TCGTGGGGTTGA
AA sequence Show only first row Show all	>Lus10006382 pacid=23162625 polypeptide=Lus10006382 locus=Lus10006382.g ID=Lus10006382.BGIv1.0 annot-version=v1.0 MSKTTSQDLKFCSFSLAVLLKTPTLEFSQLSKIPADPSRIFQKIISQSCKQKMVGLSLGEKHFIAGGIDHNIRSDGRERDSYRPILVETSVIPQANGSAR VRMGATEVIASVKAELGKPSALHPAKGKVFIHVDCSAGRGGEDLSAELSVALQRCLLGSTDGAGAGIDMTLPVKAALANAAIPRVNVSAAASGGKQPEVD ISEDEFLQFDTSGVPVIITLTKVGGHYIMDATSDEESQMSSAVSVSVHRKGLICGLTKRGGIGLDPSVISDMISFAQRLSEQLMTKLDSGISAAEAEVDE SWG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G07750			3'-5'-exoribonuclease family p...		Lus10006382 [exp]	0	1
AT1G71490			Tetratricopeptide repeat (TPR)...		Lus10003508 [exp]	2.6	0.8129
AT4G14385			unknown protein		Lus10011821 [exp]	6.9	0.8291
AT1G13440		GAPC2, GAPC-2	GLYCERALDEHYDE-3-PHOSPHATE DEH...		Lus10022332 [exp]	8.9	0.8381
AT2G27790			RNA-binding (RRM/RBD/RNP motif...		Lus10030890 [exp]	12.0	0.7538
AT5G41480		EMB9, ATDFA, GL...	GLOBULAR ARREST1, EMBRYO DEFEC...		Lus10014939 [exp]	13.6	0.8313
AT4G37020			unknown protein		Lus10000435 [exp]	14.3	0.8159
AT1G68080			2-oxoglutarate (2OG) and Fe(II...		Lus10019134 [exp]	15.5	0.7696
AT4G25280			P-loop containing nucleoside t...		Lus10031135 [exp]	16.2	0.7779
AT1G16670			Protein kinase superfamily pro...		Lus10028149 [exp]	18.1	0.8207
AT3G28760			unknown protein		Lus10005250 [exp]	18.1	0.8083

Compare expression of checked genes

Lus10006382 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.