Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G35770 112 / 7e-30 SAP STERILE APETALA, Transducin/WD40 repeat-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G166400 [exp] 124 / 3e-34 AT5G35770 484 / 1e-169 STERILE APETALA, Transducin/WD40 repeat-like superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10006384 pacid=23162641 polypeptide=Lus10006384 locus=Lus10006384.g ID=Lus10006384.BGIv1.0 annot-version=v1.0 ATGGTGTTCGATCTGCGGAATCAAGGGGTGATATTGGGGGAAGAGGAGTATGGAAGAGGGGTGATAGTCGGGTGTACGGATGTCTGGAACGAGGCGTACG TGACGGTGGACGGGAGAGGCGCTGCTAGCGTGCGCCGCGTGGAGACGATGGAGGAGATTTGCGGGTTCGGGTTGAATATCGGTAGACCCGGAGGAAGAGG CGGCGGGGTAATGGGGTGTATGAACGGAGGGTACGCGCTGATATGCGCGGGTGGGGTGATCAGGGTATTGGGAATCGAAGGGAGGGATGGTGAGTATCTG TATAGGTTTGGAGAAAGAGTACACGGGGAAGTCAACGCCATGGTCGCCGACGAGAGACACGTGGCGGTGGCGGCAGGGGATACGGTGATTCATTTGTGGG ATTTTGGGGCGGAGCAGGATGATTAA
AA sequence Show only first row Show all	>Lus10006384 pacid=23162641 polypeptide=Lus10006384 locus=Lus10006384.g ID=Lus10006384.BGIv1.0 annot-version=v1.0 MVFDLRNQGVILGEEEYGRGVIVGCTDVWNEAYVTVDGRGAASVRRVETMEEICGFGLNIGRPGGRGGGVMGCMNGGYALICAGGVIRVLGIEGRDGEYL YRFGERVHGEVNAMVADERHVAVAAGDTVIHLWDFGAEQDD

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G35770		SAP	STERILE APETALA, Transducin/WD...		Lus10006384 [exp]	0	1
AT1G55580	GRAS	SCL18, LAS	SCARECROW-LIKE 18, Lateral Sup...		Lus10032882 [exp]	12.4	0.9297
AT5G03620			Subtilisin-like serine endopep...		Lus10035598 [exp]	16.6	0.7937
AT3G19500	bHLH	bHLH113	basic helix-loop-helix (bHLH) ...		Lus10026589 [exp]	17.8	0.9282
AT1G72610		ATGER1, GLP1	A. THALIANA GERMIN-LIKE PROTEI...		Lus10037666 [exp]	20.9	0.9228
AT5G62360			Plant invertase/pectin methyle...		Lus10032233 [exp]	23.2	0.8446
AT1G12980	AP2_ERF	DRN, ESR1	ENHANCER OF SHOOT REGENERATION...		Lus10014345 [exp]	25.2	0.9197
AT2G20815		QWRF3	QWRF domain containing 3, Fami...		Lus10039786 [exp]	27.0	0.9193
AT5G26330			Cupredoxin superfamily protein...		Lus10006680 [exp]	32.2	0.9170
AT1G73620			Pathogenesis-related thaumatin...		Lus10031346 [exp]	32.2	0.9174
					Lus10038707 [exp]	34.4	0.9170

Compare expression of checked genes

Lus10006384 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.