Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G35790 869 / 0 G6PD1 glucose-6-phosphate dehydrogenase 1 (.1) AT5G13110 850 / 0 G6PD2 glucose-6-phosphate dehydrogenase 2 (.1) AT1G24280 835 / 0 G6PD3 glucose-6-phosphate dehydrogenase 3 (.1) AT1G09420 537 / 0 G6PD4 glucose-6-phosphate dehydrogenase 4 (.1.2) AT3G27300 477 / 6e-164 G6PD5 glucose-6-phosphate dehydrogenase 5 (.1.2.3) AT5G40760 459 / 4e-157 G6PD6 glucose-6-phosphate dehydrogenase 6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012340 [exp] 859 / 0 AT5G35790 705 / 0.0 glucose-6-phosphate dehydrogenase 1 (.1) Lus10003134 [exp] 835 / 0 AT5G13110 973 / 0.0 glucose-6-phosphate dehydrogenase 2 (.1) Lus10011340 [exp] 834 / 0 AT5G13110 967 / 0.0 glucose-6-phosphate dehydrogenase 2 (.1) Lus10014615 [exp] 462 / 4e-158 AT5G40760 905 / 0.0 glucose-6-phosphate dehydrogenase 6 (.1) Lus10032079 [exp] 465 / 7e-155 AT5G40760 873 / 0.0 glucose-6-phosphate dehydrogenase 6 (.1) Lus10014614 [exp] 434 / 8e-148 AT5G40760 782 / 0.0 glucose-6-phosphate dehydrogenase 6 (.1) Lus10012339 [exp] 199 / 6e-62 AT5G35790 181 / 5e-56 glucose-6-phosphate dehydrogenase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G166800 [exp] 915 / 0 AT5G35790 931 / 0.0 glucose-6-phosphate dehydrogenase 1 (.1) Potri.001G059900 [exp] 835 / 0 AT5G13110 956 / 0.0 glucose-6-phosphate dehydrogenase 2 (.1) Potri.003G168000 [exp] 823 / 0 AT5G13110 950 / 0.0 glucose-6-phosphate dehydrogenase 2 (.1) Potri.013G005200 [exp] 547 / 0 AT1G09420 815 / 0.0 glucose-6-phosphate dehydrogenase 4 (.1.2) Potri.001G337400 [exp] 472 / 4e-162 AT5G40760 910 / 0.0 glucose-6-phosphate dehydrogenase 6 (.1) Potri.017G070200 [exp] 463 / 1e-158 AT5G40760 902 / 0.0 glucose-6-phosphate dehydrogenase 6 (.1) Potri.005G005866 [exp] 85 / 1e-18 AT1G09420 133 / 4e-36 glucose-6-phosphate dehydrogenase 4 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00479 [flax] [poplar] G6PD_N Glucose-6-phosphate dehydrogenase, NAD binding domain CL0139 [flax] [poplar] GADPH_aa-bio_dh PF02781 [flax] [poplar] G6PD_C Glucose-6-phosphate dehydrogenase, C-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10006386 pacid=23162656 polypeptide=Lus10006386 locus=Lus10006386.g ID=Lus10006386.BGIv1.0 annot-version=v1.0 ATGACGGCAGTGACCCATTTCAGCAATTGCTCCGCTTCCTTCAACAGTCATTCTAAGCTATTCAGCATCAGCAGCAGCAGCAGCAGAAGTTCCCCTGCTG CTGCTCTGCCCAGATCATCACTGTTTTCAGCTAATTTCTCCACCGCAGAAAGACATGGCTGTTTCAGGATCAGTTCATGCAATGGGAATCCACTGAACGC CGTGTCTCTTCAGGATTCCTTCCCCACGTCAGAATCCGCTGCCGATTTTAACGACGATGAACAGAGCAGTACTGATTCTACCCTGAGCATCACCGTGGTC GGTGCTTCAGGGGATCTCGCCAAGAAGAAGATATTCCCGGCCCTTTTCGCTCTTTACTATGAAGATTGGCTCCCTGAGAATTTCACGGTGTTTGGGTACG CTCGCTCTAGAATGACGGATGAGGAGCTTAGGAACATGATCAGCCAGACCTTGACTTGTAGAATCGACAGGAGGGAAGGTTGCGAGGAGAAGATGGACAA GTTCTTGAGGAGATGCTTCTACCACGCTGGACAGTATAGCTCAGAGGAACACTTTGCAGAATTGGATGCTAAGCTTAAAGAGAAAGAGGCAGGAAAACTC GCAAACAGGCTATATTATTTGTCAATTCCTCCCAACATCTTTGTGGATGTGGTGAGGTGTGCTAGCCTTAGAGCTTCTTCCACAAATGGTTGGACAAGGG TCATTGTTGAGAAGCCATTCGGCCGCGATGCTGAGTCGTCTTCTGAGCTAACCAAATCCCTGAAGCAGTATCTGTCCGAGGAGCAGATATTTAGGATTGA TCACTACTTGGGGAAGGAGCTGGTGGAGAATCTATCGGTGCTTCGGTTTTCGAATCGAGTCTTTGAGCCTCTTTGGTCGAGGGACTACATTCGCAACGTG CAGCTGATATTCTCGGAAGATTTCGGTACAGAAGGACGAGGAGGGTACTTTGACAACTATGGCATCATAAGAGACATAATGCAGAACCATCTGCTTCAAA TACTAGCATTGTTCGCTATGGAGACGCCTGTCAGTTTAGATGCTGAAGACATTAGGAATGAAAAGGTGAAGGTACTGAGGTCAATGGGGAATCTGAAGCT TGAAGACGTAACTGTTGGCCAATACAAAGGACTTACCAATGGTGGGAAGACGTATCCTGGCTATACAGATGATCCAACGGTGCCAAAGGACAGCATCACA CCAACGTTCGCCGCCGCGGCTCTTTTCATTAACAATGCTCGGTGGGACGGTGTCCCATTCCTCATGAAAGCTGGCAAAGCTCTTCATACTAAAAGAGCAG AGATCAGGGTGCAATTCAGACATGTGCCAGGAAACTTGTACAAGAAGAACTTCGGAACCGATCTGGACAAAGCAACAAATGAGCTGGTGCTACGAGTACA ACCTGATGAAGCCATTTATCTAAAGATAAACAACAAAGTTCCAGGGCTTGGGATGAGACTTGACCGCAGTGACCTCAATTTGCTGTACAAGGCCAGGTAT CCAAGAGAAATCCCGGATGCTTACGAGAGGCTGCTTCTGGACGCCATAGAAGGGGAAAGGAGGTTGTTCATAAGGAGTGACGAGCTTGATGCTGCGTGGG CACGGTTTACGCCATTGTTGAAGGAACTCGAGGAGAAGAAAATAGTGCCGGAGCTGTATCCTTACGGTAGCAGAGGTCCAGTTGGTGCACATTATCTTGC TGCTAAGCATAATGTTCGCTGGGGAGATCTCAGTGGCGATGACTCTTAA
AA sequence Show only first row Show all	>Lus10006386 pacid=23162656 polypeptide=Lus10006386 locus=Lus10006386.g ID=Lus10006386.BGIv1.0 annot-version=v1.0 MTAVTHFSNCSASFNSHSKLFSISSSSSRSSPAAALPRSSLFSANFSTAERHGCFRISSCNGNPLNAVSLQDSFPTSESAADFNDDEQSSTDSTLSITVV GASGDLAKKKIFPALFALYYEDWLPENFTVFGYARSRMTDEELRNMISQTLTCRIDRREGCEEKMDKFLRRCFYHAGQYSSEEHFAELDAKLKEKEAGKL ANRLYYLSIPPNIFVDVVRCASLRASSTNGWTRVIVEKPFGRDAESSSELTKSLKQYLSEEQIFRIDHYLGKELVENLSVLRFSNRVFEPLWSRDYIRNV QLIFSEDFGTEGRGGYFDNYGIIRDIMQNHLLQILALFAMETPVSLDAEDIRNEKVKVLRSMGNLKLEDVTVGQYKGLTNGGKTYPGYTDDPTVPKDSIT PTFAAAALFINNARWDGVPFLMKAGKALHTKRAEIRVQFRHVPGNLYKKNFGTDLDKATNELVLRVQPDEAIYLKINNKVPGLGMRLDRSDLNLLYKARY PREIPDAYERLLLDAIEGERRLFIRSDELDAAWARFTPLLKELEEKKIVPELYPYGSRGPVGAHYLAAKHNVRWGDLSGDDS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G35790		G6PD1	glucose-6-phosphate dehydrogen...		Lus10006386 [exp]	0	1
AT5G35790		G6PD1	glucose-6-phosphate dehydrogen...		Lus10012340 [exp]	1.4	0.9239
AT1G32060		PRK	phosphoribulokinase (.1)		Lus10030949 [exp]	2.4	0.9073
AT2G35260			unknown protein		Lus10040089 [exp]	2.8	0.9156
AT3G21870		CYCP2;1	cyclin p2;1 (.1)		Lus10027148 [exp]	4.0	0.8802
AT5G17230		PSY	PHYTOENE SYNTHASE (.1.2.3)		Lus10029809 [exp]	5.9	0.8972
AT3G12490		ATCYS6, ATCYSB	ARABIDOPSIS THALIANA PHYTOCYST...		Lus10008702 [exp]	7.7	0.8565
AT4G38460		GGR	geranylgeranyl reductase (.1)		Lus10025096 [exp]	8.5	0.8986
AT1G04780			Ankyrin repeat family protein ...		Lus10011743 [exp]	8.5	0.8793
AT1G03750		SWI2, SNF2, CHR...	CHROMATIN REMODELING 9, switch...		Lus10017712 [exp]	9.6	0.8534
AT2G12400			unknown protein		Lus10008813 [exp]	9.7	0.9040

Compare expression of checked genes

Lus10006386 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.