Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G13130 49 / 5e-07 unknown protein AT2G04515 40 / 0.0006 unknown protein AT2G04495 40 / 0.0007 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012341 [exp] 239 / 3e-80 AT3G13130 71 / 7e-15 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G166900 [exp] 44 / 3e-05 AT2G04515 52 / 1e-08 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05553 [flax] [poplar] DUF761 Cotton fibre expressed protein
Representative CDS sequence Show only first row Show all	>Lus10006387 pacid=23162647 polypeptide=Lus10006387 locus=Lus10006387.g ID=Lus10006387.BGIv1.0 annot-version=v1.0 ATGGTACCAAGTCACCAGAAGACGTCTCTGGCTTTGAGCCAATTGAGCAATTCTCTGTCAGTATGGAAGGCTACAAAGTTCTTAGCTCCACTTCTCTTGT CCTTTGTGCTGTTGCAGCACTCTTCTTATCGCCTTCCTCTAGTAGTTGATTTCTCCACCATGGTTATGGACAAGAATTACATGTTCATCCTCTGCAATGG CATCTTGGCTCTGATTGCCAAGACTTCTGGTCTCATTGGAAATGGGGAAAATGTTCCAGCTGCTGCTGGATCTCGGCCAGAGATGGAAGATAAGGAGAGA GCCCAAAAGGAAGAAGAAAGAGAAGTAATTACAGAAGCTGGAAAGGAAGAGGAGGCCAAGAAAGATGTCATCTTGATCACAGAAGAATTGAATAAAGAGG AAGAAGGAAAAGGAGAAACAATTGCAGAAGCTGAAAAGGAAAAGGAAGCCAAGGAAGATGTCATTTTGATCACAGAAGAACTGAAGGTTGATGCTGTTAT GCAGCAGAAGAATGGAGGCGATGAAGAAGTAGAAGAAGAGGGAAATGGGTTGCTGAGTGCAGAGGAATTGCAGAGGAAATGTGAAGAGTTCATTAGGAAG ATGAAAGCTGGAATCAAGTTTGAAGCTCAGCAGCAACAGCAACAACAACAGCTCATCATGGTGCAGTGA
AA sequence Show only first row Show all	>Lus10006387 pacid=23162647 polypeptide=Lus10006387 locus=Lus10006387.g ID=Lus10006387.BGIv1.0 annot-version=v1.0 MVPSHQKTSLALSQLSNSLSVWKATKFLAPLLLSFVLLQHSSYRLPLVVDFSTMVMDKNYMFILCNGILALIAKTSGLIGNGENVPAAAGSRPEMEDKER AQKEEEREVITEAGKEEEAKKDVILITEELNKEEEGKGETIAEAEKEKEAKEDVILITEELKVDAVMQQKNGGDEEVEEEGNGLLSAEELQRKCEEFIRK MKAGIKFEAQQQQQQQQLIMVQ

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G13130			unknown protein		Lus10006387 [exp]	0	1
AT5G64810	WRKY	ATWRKY51, WRKY5...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10035841 [exp]	2.4	0.9143
AT5G10530			Concanavalin A-like lectin pro...		Lus10007074 [exp]	4.9	0.8695
AT5G01750			Protein of unknown function (D...		Lus10025254 [exp]	5.5	0.8737
AT3G13130			unknown protein		Lus10012341 [exp]	5.8	0.8821
AT1G70520		ASG6, CRK2	ALTERED SEED GERMINATION 6, cy...		Lus10010960 [exp]	8.1	0.8650
AT5G01750			Protein of unknown function (D...		Lus10009092 [exp]	9.4	0.8519
AT2G45760		BAL, BAP2	BON ASSOCIATION PROTEIN 1-LIKE...		Lus10008004 [exp]	9.8	0.8640
AT5G44510		TAO1	target of AVRB operation1 (.1)		Lus10001537 [exp]	12.4	0.8432
AT1G68090		ANN5, ANNAT5	ANNEXIN ARABIDOPSIS THALIANA 5...		Lus10040415 [exp]	13.5	0.8593
AT5G04220		SYT3, NTMCTYPE1...	synaptotagmin 3, Calcium-depen...		Lus10040414 [exp]	13.9	0.7784

Compare expression of checked genes

Lus10006387 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.