Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G35840 492 / 1e-164 PHYC phytochrome C (.1) AT1G09570 356 / 3e-113 FHY2, HY8, FRE1, PHYA ELONGATED HYPOCOTYL 8, FAR RED ELONGATED 1, FAR RED ELONGATED HYPOCOTYL 2, phytochrome A (.1.2) AT2G18790 354 / 2e-111 OOP1, HY3, PHYB OUT OF PHASE 1, phytochrome B (.1) AT4G16250 337 / 4e-105 PHYD phytochrome D (.1) AT4G18130 295 / 6e-90 PHYE phytochrome E (.1) AT2G01830 63 / 2e-10 CRE1, AHK4, WOL1, WOL, ATCRE1 WOODEN LEG 1, WOODEN LEG, CYTOKININ RESPONSE 1, ARABIDOPSIS HISTIDINE KINASE 4, CHASE domain containing histidine kinase protein (.1.2.3) AT1G27320 62 / 5e-10 AHK3 histidine kinase 3 (.1) AT1G66340 60 / 2e-09 AtETR1, EIN1, ETR1 ETHYLENE RESPONSE 1, ETHYLENE RESPONSE, ETHYLENE INSENSITIVE 1, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1) AT5G35750 54 / 2e-07 AHK2 histidine kinase 2 (.1) AT2G17820 47 / 3e-05 AHK1, ATHK1 histidine kinase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012342 [exp] 918 / 0 AT5G35840 1363 / 0.0 phytochrome C (.1) Lus10006389 [exp] 896 / 0 AT5G35840 1426 / 0.0 phytochrome C (.1) Lus10007594 [exp] 373 / 9e-119 AT1G09570 1852 / 0.0 ELONGATED HYPOCOTYL 8, FAR RED ELONGATED 1, FAR RED ELONGATED HYPOCOTYL 2, phytochrome A (.1.2) Lus10012151 [exp] 363 / 4e-115 AT1G09570 1855 / 0.0 ELONGATED HYPOCOTYL 8, FAR RED ELONGATED 1, FAR RED ELONGATED HYPOCOTYL 2, phytochrome A (.1.2) Lus10016911 [exp] 362 / 1e-114 AT2G18790 1836 / 0.0 OUT OF PHASE 1, phytochrome B (.1) Lus10037771 [exp] 358 / 4e-113 AT2G18790 1848 / 0.0 OUT OF PHASE 1, phytochrome B (.1) Lus10011967 [exp] 315 / 3e-97 AT4G18130 1444 / 0.0 phytochrome E (.1) Lus10004592 [exp] 197 / 9e-59 AT4G18130 321 / 1e-100 phytochrome E (.1) Lus10003686 [exp] 64 / 2e-10 AT2G01830 1330 / 0.0 WOODEN LEG 1, WOODEN LEG, CYTOKININ RESPONSE 1, ARABIDOPSIS HISTIDINE KINASE 4, CHASE domain containing histidine kinase protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G105200 [exp] 370 / 8e-118 AT2G18790 1840 / 0.0 OUT OF PHASE 1, phytochrome B (.1) Potri.013G000300 [exp] 370 / 9e-118 AT1G09570 1806 / 0.0 ELONGATED HYPOCOTYL 8, FAR RED ELONGATED 1, FAR RED ELONGATED HYPOCOTYL 2, phytochrome A (.1.2) Potri.010G145900 [exp] 360 / 1e-113 AT2G18790 1820 / 0.0 OUT OF PHASE 1, phytochrome B (.1) Potri.010G102900 [exp] 65 / 8e-11 AT2G01830 1381 / 0.0 WOODEN LEG 1, WOODEN LEG, CYTOKININ RESPONSE 1, ARABIDOPSIS HISTIDINE KINASE 4, CHASE domain containing histidine kinase protein (.1.2.3) Potri.008G137900 [exp] 64 / 9e-11 AT2G01830 1390 / 0.0 WOODEN LEG 1, WOODEN LEG, CYTOKININ RESPONSE 1, ARABIDOPSIS HISTIDINE KINASE 4, CHASE domain containing histidine kinase protein (.1.2.3) Potri.001G204200 [exp] 58 / 1e-08 AT1G66340 1216 / 0.0 ETHYLENE RESPONSE 1, ETHYLENE RESPONSE, ETHYLENE INSENSITIVE 1, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1) Potri.001G057400 [exp] 57 / 1e-08 AT1G27320 1384 / 0.0 histidine kinase 3 (.1) Potri.014G164700 [exp] 54 / 2e-07 AT5G35750 1359 / 0.0 histidine kinase 2 (.1) Potri.003G032300 [exp] 53 / 3e-07 AT1G66340 1228 / 0.0 ETHYLENE RESPONSE 1, ETHYLENE RESPONSE, ETHYLENE INSENSITIVE 1, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1) Potri.002G201500 [exp] 50 / 2e-06 AT2G40940 897 / 0.0 ethylene response sensor 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0025 [flax] [poplar] His_Kinase_A PF02518 [flax] [poplar] HATPase_c Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CL0183 [flax] [poplar] PAS_Fold PF00989 [flax] [poplar] PAS PAS fold
Representative CDS sequence Show only first row Show all	>Lus10006388 pacid=23162674 polypeptide=Lus10006388 locus=Lus10006388.g ID=Lus10006388.BGIv1.0 annot-version=v1.0 ATGGAAATCACATTCAGAACTTTCAATCGCGGGAAAAGCAAGGGTCCCGTGTATCTTGTTGTTAGTGTGTGTTGCAATCGAGACATCAAGGGAGACATGG CGGGTATCTGCTTTGTCGGGCAAGATCTCACGGGACAAAAGATGGTCATGGATAGATACAAACGGTTCAAGGGAGATTACCTAGGAATCGTCAGGAATCA GTCTGCCATTATTCCTCCTATTTTCATGAGTGATGAACATGGTAAATGCTTGGAGTGGAATGAGGCAATGCAAAAATTGTCCGGTTTGAAGAGGGAAGAA GCTATCGGACGCCAACTTCTTGGGGAGGTTTTCACTGTGGACAATTCTGGTTGCCGGGTGAAAGATCAGGACACCCTAACCAAGCTCAGGATCTTACTGA ACGGAGCACTTGCTGGCCAGGATTCAGAGCCCTTGTTATTTGGTTTATTTGATAAACATGGGAAGCCTGTTGATGCTTTAGTTAATGGAAATGCAAGGAC TGATGCAGAGGGCCGGGTTTCTGGGGTTCTGTTCTTTTTGTATGTTCCGAGTCGAGAACTGCAATATGCATGGCAGGTCCAGAAAATATCTGAACAGGCT GCAGCTACTAGCCTTAATAAGCTGACATATGTACGCCACGAAGCTGCGAAAGGCCTAAATGGCCTAACTTTGATGCAGAACCTAATGGAAAGAACCGATT TGAGCGAAGAACAGAAGCAGCTTTTTAAGACGAGCACCTTGTGTCGAGAACAGTTGACTACAATCATCAATGATACTGATATTGGCCGGATTGAAGATTT GTATCTGGAGCTCCGCACTGTGGAATTCAACCTCGGGGAAGTTCTAGACGTGGTTGTCAAGCAAGCTATGGAGTTGAGCCTTGACCGGAAAGTAGAGATT GCTCGCGATTTTCCAGCAGAGTTGTCTTCCATGAACTTGTATGGAGATAACTTGAGGCTCCAGCAAGTTCTGGCTGATTTCTTGACAAATTCAATACTGT TCACTCCAGCACTGAATGAGTCCTCTGTTGCGTTGAAAGTAGTTTTCCGGAAGGAATGCATGGGAGTGAAGGTGCAGATCGTCCACCTCGAGTTTCAAAT CAGCCATCCGGCTCCAGGTTTCCCTGAAGATCTAGTCCGGGAAATGTTTCACTCGCAGGGGAAAGGTACTTCAAGGGAAGGTCTTGGCCTTTACATGAGC CACAAGCTAGTGAAGACCATGAATGGGAATGTACAGTATCTCCGGGAAGCAGAAAGTTCGTCTTTTATCATCCTCATCGCGTTCCCTCTGGTTACACCAG TCGAGAATCCCTCAAGGTCAAAAGAGTCAAGTTGA
AA sequence Show only first row Show all	>Lus10006388 pacid=23162674 polypeptide=Lus10006388 locus=Lus10006388.g ID=Lus10006388.BGIv1.0 annot-version=v1.0 MEITFRTFNRGKSKGPVYLVVSVCCNRDIKGDMAGICFVGQDLTGQKMVMDRYKRFKGDYLGIVRNQSAIIPPIFMSDEHGKCLEWNEAMQKLSGLKREE AIGRQLLGEVFTVDNSGCRVKDQDTLTKLRILLNGALAGQDSEPLLFGLFDKHGKPVDALVNGNARTDAEGRVSGVLFFLYVPSRELQYAWQVQKISEQA AATSLNKLTYVRHEAAKGLNGLTLMQNLMERTDLSEEQKQLFKTSTLCREQLTTIINDTDIGRIEDLYLELRTVEFNLGEVLDVVVKQAMELSLDRKVEI ARDFPAELSSMNLYGDNLRLQQVLADFLTNSILFTPALNESSVALKVVFRKECMGVKVQIVHLEFQISHPAPGFPEDLVREMFHSQGKGTSREGLGLYMS HKLVKTMNGNVQYLREAESSSFIILIAFPLVTPVENPSRSKESS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G35840		PHYC	phytochrome C (.1)		Lus10006388 [exp]	0	1
AT5G35840		PHYC	phytochrome C (.1)		Lus10006389 [exp]	2.8	0.8171
AT3G19553			Amino acid permease family pro...		Lus10009849 [exp]	2.8	0.8051
AT5G35840		PHYC	phytochrome C (.1)		Lus10012342 [exp]	4.0	0.7844
AT2G20680		MAN2, AtMAN2	endo-beta-mannase 2, Glycosyl ...		Lus10027329 [exp]	14.2	0.8020
AT4G12590			Protein of unknown function DU...		Lus10039028 [exp]	14.5	0.7715
AT3G01470	HD	HD-ZIP-1, HAT5,...	HOMEODOMAIN PROTEIN FROM ARABI...		Lus10042180 [exp]	14.7	0.7162
AT5G25050			Major facilitator superfamily ...		Lus10026893 [exp]	19.9	0.7129
AT1G63690		ATSPPL2	SIGNAL PEPTIDE PEPTIDASE-LIKE ...		Lus10031104 [exp]	21.0	0.7596
AT1G05500		SYT5, NTMCTYPE2...	synaptotagmin 5, ARABIDOPSIS T...		Lus10038117 [exp]	32.0	0.7141
AT1G09660			RNA-binding KH domain-containi...		Lus10037344 [exp]	33.2	0.7252

Compare expression of checked genes

Lus10006388 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.