Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G12730 402 / 7e-138 FLA2 FASCICLIN-like arabinogalactan 2 (.1) AT5G55730 341 / 1e-113 FLA1 FASCICLIN-like arabinogalactan 1 (.1.2) AT2G45470 253 / 1e-79 AGP8, FLA8 FASCICLIN-like arabinogalactan protein 8 (.1) AT3G60900 239 / 6e-74 FLA10 FASCICLIN-like arabinogalactan-protein 10 (.1) AT3G12660 125 / 5e-33 FLA14 FASCICLIN-like arabinogalactan protein 14 precursor (.1) AT2G24450 106 / 9e-26 FLA3 FASCICLIN-like arabinogalactan protein 3 precursor (.1) AT3G46550 105 / 1e-24 FLA4, SOS5 salt overly sensitive 5, fasciclin-like arabinogalactan-protein 4, Fasciclin-like arabinogalactan family protein (.1) AT4G31370 96 / 6e-22 FLA5 FASCICLIN-like arabinogalactan protein 5 precursor (.1) AT5G60490 71 / 8e-14 FLA12 FASCICLIN-like arabinogalactan-protein 12 (.1) AT5G03170 69 / 5e-13 ATFLA11, FLA11, IRX13 ARABIDOPSIS FASCICLIN-LIKE ARABINOGALACTAN-PROTEIN 11, FASCICLIN-like arabinogalactan-protein 11 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012344 [exp] 602 / 0 AT4G12730 446 / 9e-156 FASCICLIN-like arabinogalactan 2 (.1) Lus10001178 [exp] 518 / 0 AT4G12730 432 / 4e-150 FASCICLIN-like arabinogalactan 2 (.1) Lus10001752 [exp] 424 / 3e-147 AT4G12730 340 / 1e-115 FASCICLIN-like arabinogalactan 2 (.1) Lus10016617 [exp] 378 / 2e-128 AT5G55730 445 / 4e-155 FASCICLIN-like arabinogalactan 1 (.1.2) Lus10022517 [exp] 372 / 7e-126 AT5G55730 438 / 2e-152 FASCICLIN-like arabinogalactan 1 (.1.2) Lus10009235 [exp] 256 / 2e-80 AT2G45470 516 / 0.0 FASCICLIN-like arabinogalactan protein 8 (.1) Lus10038004 [exp] 178 / 4e-53 AT2G45470 316 / 8e-108 FASCICLIN-like arabinogalactan protein 8 (.1) Lus10040821 [exp] 122 / 4e-30 AT3G46550 391 / 6e-134 salt overly sensitive 5, fasciclin-like arabinogalactan-protein 4, Fasciclin-like arabinogalactan family protein (.1) Lus10016554 [exp] 111 / 2e-26 AT3G46550 398 / 8e-137 salt overly sensitive 5, fasciclin-like arabinogalactan-protein 4, Fasciclin-like arabinogalactan family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G168100 [exp] 452 / 7e-158 AT4G12730 427 / 6e-149 FASCICLIN-like arabinogalactan 2 (.1) Potri.011G093500 [exp] 373 / 2e-126 AT5G55730 432 / 4e-150 FASCICLIN-like arabinogalactan 1 (.1.2) Potri.001G367900 [exp] 360 / 2e-121 AT5G55730 454 / 5e-159 FASCICLIN-like arabinogalactan 1 (.1.2) Potri.014G071700 [exp] 254 / 6e-80 AT2G45470 494 / 2e-174 FASCICLIN-like arabinogalactan protein 8 (.1) Potri.001G037800 [exp] 126 / 2e-32 AT3G12660 166 / 2e-49 FASCICLIN-like arabinogalactan protein 14 precursor (.1) Potri.018G097000 [exp] 125 / 2e-31 AT3G46550 315 / 3e-104 salt overly sensitive 5, fasciclin-like arabinogalactan-protein 4, Fasciclin-like arabinogalactan family protein (.1) Potri.006G174900 [exp] 120 / 1e-29 AT3G46550 326 / 2e-108 salt overly sensitive 5, fasciclin-like arabinogalactan-protein 4, Fasciclin-like arabinogalactan family protein (.1) Potri.018G005100 [exp] 116 / 1e-29 AT2G24450 174 / 2e-53 FASCICLIN-like arabinogalactan protein 3 precursor (.1) Potri.006G276200 [exp] 111 / 2e-27 AT2G24450 159 / 4e-47 FASCICLIN-like arabinogalactan protein 3 precursor (.1) Potri.006G129200 [exp] 68 / 9e-13 AT5G03170 199 / 9e-64 ARABIDOPSIS FASCICLIN-LIKE ARABINOGALACTAN-PROTEIN 11, FASCICLIN-like arabinogalactan-protein 11 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02469 [flax] [poplar] Fasciclin Fasciclin domain
Representative CDS sequence Show only first row Show all	>Lus10006391 pacid=23162675 polypeptide=Lus10006391 locus=Lus10006391.g ID=Lus10006391.BGIv1.0 annot-version=v1.0 ATGTCACACGCGCCGCCGCCTTCCACCTTCACCTTCACCTTCACCTTCACCCTTTTCTTCTCCATCTTCCTCTTCTCCACAGTCTCGGCCCACAACATAA CCCACATATTAGCAAAGCACCCGGAGTTCTCCACCTTCAACCACTACCTCACCGTCACCCACCTGGCCGCCGAGATAAACCGCCGCGAGACCATCACCGT CCTCGCCCTTGACAACGCTGCCATGCCGTCCTTACTCGACAAGCACTTGTCGGTCACCACGCTCAGGAACGTCCTGTCCCTGCACGTGCTGGTGGACTAC TTCGGCGCCAAGAAGCTCCACCAGATCACGGGGGGCTCAACCCTGAGCTCCACCATGTTCCAGGCCACCGGCGCCGCTCCGGGGACTTCCGGTTACTTGA ACATCACGGATCTGAAAGGTGGGAAGGTGGCGTTCGCCCCCGAGGAGAATGACGGCAAGATGGACGCTCTTTTCGTTAAGTCGGTCGTCGAGATGCCTTA CAACATCTCCGTCGTGCATATCAGTCAGGCGTTAAATTCAGCGGAAGCAGAGGCGCCAGCATCAGCACCATCACTAAACCTGACAGCAATCCTCCACAAG CAAGGATGCACCAAATTCGCCGACTTGCTATCCGCCAGCGGAGCACTATCCACCTTCGAAGACAACGTCGACGGAGGTTTAACGGTGTTCTGCCCCTCCG ACGCTTCGGTCACCTCCTTCATGCCGAAATACAAAAACCTAACCGACTCCCACAAGCTCTCCCTCTGCCTTTATCACGGAATCCCGGTCTTCATGTCGAT GCAGATGCTCAAATCCAACAATGGCGTCGCCAACACCCTCGCCACCGACGGCGCCACCAAGTACGACCTCACCGTCCAGGACGACGGCGAGATCGTCAAG CTGGAGACGAAAGTGGTCACGGCGACGATTACTGGGACGCTCAAGGAGCAGGATCCGTTGATTGTGTTTAAAGTGGATAAGGTTTTGCAGCCCAAGGAGC TGTTTAAGGCGACGGTAGATGATGACGCGCCGGCGCCGAAAGGGGCTAAGTCGGCTAAGGCTAAGGGGAAGGCGAAATCGGCTGCTGCTGATTCGCCGGA TGATGCCGATGCGCCCGAGGGGGATTCGGATGATTCGACGGCTGCTGATGATGATCAGAATGGTGTTGGGAAGATGGACGGTGGGAGATTGGGATTGGCT AAGTCGGCTAAGTCTAAGGGGAAGGCGAAATCGGCTGCTGCTGATTCGCCGGATGATGCCGATGCGCCCGAGGGGGATTCGGATGATTCGACGGCTGCTG ATGATGATCAGAATGGTGTTGGGAAGATGGACGGTGGGAGATTGGTGATGGTTGCTCTGAGTTTGTGTATAGGTGTCATGTTGCTTTGA
AA sequence Show only first row Show all	>Lus10006391 pacid=23162675 polypeptide=Lus10006391 locus=Lus10006391.g ID=Lus10006391.BGIv1.0 annot-version=v1.0 MSHAPPPSTFTFTFTFTLFFSIFLFSTVSAHNITHILAKHPEFSTFNHYLTVTHLAAEINRRETITVLALDNAAMPSLLDKHLSVTTLRNVLSLHVLVDY FGAKKLHQITGGSTLSSTMFQATGAAPGTSGYLNITDLKGGKVAFAPEENDGKMDALFVKSVVEMPYNISVVHISQALNSAEAEAPASAPSLNLTAILHK QGCTKFADLLSASGALSTFEDNVDGGLTVFCPSDASVTSFMPKYKNLTDSHKLSLCLYHGIPVFMSMQMLKSNNGVANTLATDGATKYDLTVQDDGEIVK LETKVVTATITGTLKEQDPLIVFKVDKVLQPKELFKATVDDDAPAPKGAKSAKAKGKAKSAAADSPDDADAPEGDSDDSTAADDDQNGVGKMDGGRLGLA KSAKSKGKAKSAAADSPDDADAPEGDSDDSTAADDDQNGVGKMDGGRLVMVALSLCIGVMLL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G12730		FLA2	FASCICLIN-like arabinogalactan...		Lus10006391 [exp]	0	1
AT4G12730		FLA2	FASCICLIN-like arabinogalactan...		Lus10012344 [exp]	2.0	0.9068
AT1G08200		AXS2	UDP-D-apiose/UDP-D-xylose synt...		Lus10020521 [exp]	4.0	0.9017
AT5G21105			Plant L-ascorbate oxidase (.1....		Lus10026753 [exp]	4.6	0.8975
AT1G06930			unknown protein		Lus10025251 [exp]	6.9	0.8530
AT3G62830		ATUXS2, UXS2, A...	UDP-GLUCURONIC ACID DECARBOXYL...		Lus10006510 [exp]	7.0	0.8219
AT1G71020			ARM repeat superfamily protein...		Lus10043471 [exp]	7.3	0.8781
AT3G11320			Nucleotide-sugar transporter f...		Lus10009878 [exp]	7.5	0.8402
AT3G49720			unknown protein		Lus10011564 [exp]	8.6	0.8339
AT2G42380	bZIP	ATBZIP34	Basic-leucine zipper (bZIP) tr...		Lus10017656 [exp]	8.8	0.8607
AT2G19580		TET2	tetraspanin2 (.1)		Lus10007998 [exp]	9.1	0.8284

Compare expression of checked genes

Lus10006391 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.