Plant FIBer expression Database

Lus10006392 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G07720 118 / 6e-34 Galactose oxidase/kelch repeat superfamily protein (.1)
AT5G48180 89 / 1e-22 NSP5 nitrile specifier protein 5 (.1)
AT3G16400 78 / 2e-18 ATNSP1, ATMLP-470 MYROSINASE-BINDING PROTEIN-LIKE PROTEIN-470, nitrile specifier protein 1 (.1.2)
AT2G33070 77 / 3e-18 NSP2, ATNSP2 NITRILE-SPECIFIER PROTEIN 2, nitrile specifier protein 2 (.1.2.3)
AT3G16410 76 / 9e-18 NSP4 nitrile specifier protein 4 (.1)
AT3G16390 72 / 1e-16 NSP3 nitrile specifier protein 3 (.1)
AT1G54040 70 / 4e-16 TASTY, ESP, ESR EPITHIOSPECIFYING SENESCENCE REGULATOR, epithiospecifier protein (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10012345
[exp]
78 / 2e-20 AT3G07720 69 / 4e-15 Galactose oxidase/kelch repeat superfamily protein (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.014G168300
[exp]
122 / 1e-35 AT3G07720 484 / 1e-173 Galactose oxidase/kelch repeat superfamily protein (.1)
PFAM info
Representative CDS sequence
>Lus10006392 pacid=23162644 polypeptide=Lus10006392 locus=Lus10006392.g ID=Lus10006392.BGIv1.0 annot-version=v1.0
ATGGGTGCCGGAAAATTTACAGGGGAAGCCTATGCGTTGGATACGGAGACTTTGCTGTGGAAGCGGCTGGACGATGGGGCGAGCTCCGAGAAACATCCTG
GTCCTCGAGGATGGTGCGCTTATGCCGCGGGGGAGCTCGAGGGGGAGAAGGGCTTGTTGGTGTACGGTGGGAATTCTCCTAGCAATGATAGGCTTGGTGA
CTTGTTCTTCTTCACTCCTTCCTTGGTGGCCATTGGTAACTAG
AA sequence
>Lus10006392 pacid=23162644 polypeptide=Lus10006392 locus=Lus10006392.g ID=Lus10006392.BGIv1.0 annot-version=v1.0
MGAGKFTGEAYALDTETLLWKRLDDGASSEKHPGPRGWCAYAAGELEGEKGLLVYGGNSPSNDRLGDLFFFTPSLVAIGN

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G07720 Galactose oxidase/kelch repeat... Lus10006392
[exp]
0 1
AT4G13530 unknown protein Lus10041074
[exp]
3.2 0.8733
AT3G14280 unknown protein Lus10037453
[exp]
3.2 0.8454
AT1G27300 unknown protein Lus10015771
[exp]
5.5 0.8437
AT3G24535 unknown protein Lus10023639
[exp]
6.0 0.8401
AT4G38690 PLC-like phosphodiesterases su... Lus10034483
[exp]
6.9 0.7986
AT5G67190 AP2_ERF DEAR2 DREB and EAR motif protein 2 (... Lus10009373
[exp]
10.4 0.8187
AT5G63910 FCLY farnesylcysteine lyase (.1) Lus10010948
[exp]
10.5 0.8398
AT5G43180 Protein of unknown function, D... Lus10025217
[exp]
13.3 0.7686
AT1G24450 NFD2 NUCLEAR FUSION DEFECTIVE 2, Ri... Lus10042133
[exp]
18.7 0.7948
AT4G36750 Quinone reductase family prote... Lus10041718
[exp]
20.2 0.7859

Lus10006392 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.