Plant FIBer expression Database

Lus10006393 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G04865 306 / 2e-96 Aminotransferase-like, plant mobile domain family protein (.1)
AT2G25010 147 / 2e-38 Aminotransferase-like, plant mobile domain family protein (.1)
AT1G17930 132 / 2e-33 Aminotransferase-like, plant mobile domain family protein (.1)
AT1G48120 74 / 2e-13 hydrolases;protein serine/threonine phosphatases (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10012346
[exp]
880 / 0 AT2G04865 347 / 1e-112 Aminotransferase-like, plant mobile domain family protein (.1)
Lus10001163
[exp]
461 / 2e-161 AT2G04865 347 / 3e-115 Aminotransferase-like, plant mobile domain family protein (.1)
Lus10001737
[exp]
377 / 1e-122 AT2G04865 636 / 0.0 Aminotransferase-like, plant mobile domain family protein (.1)
Lus10007358
[exp]
306 / 7e-99 AT2G04865 259 / 2e-79 Aminotransferase-like, plant mobile domain family protein (.1)
Lus10042411
[exp]
45 / 0.0001 AT1G48120 56 / 2e-08 hydrolases;protein serine/threonine phosphatases (.1)
Lus10036654
[exp]
41 / 0.0003 AT1G50750 44 / 6e-06 Plant mobile domain protein family (.1)
Lus10033921
[exp]
40 / 0.0006 ND 39 / 5e-04
Lus10027682
[exp]
41 / 0.0007 AT1G48120 45 / 4e-06 hydrolases;protein serine/threonine phosphatases (.1)
Lus10000980
[exp]
41 / 0.0007 AT1G17930 56 / 9e-10 Aminotransferase-like, plant mobile domain family protein (.1)
Poplar homologues

No hit found
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF10536 PMD Plant mobile domain
Representative CDS sequence
>Lus10006393 pacid=23162663 polypeptide=Lus10006393 locus=Lus10006393.g ID=Lus10006393.BGIv1.0 annot-version=v1.0
ATGGACGTTAGTCCAGGACCCGTTGATCCCTCCGTGCTGTATGAACAGGACAAGCATGTCTCTTCTGCAGTATGGGATGGCCAGTGCTGGTGTCACTTCT
ACCTTAACATTGAGCAACGTCCTAAGCTGAACCGGGATCCTCTCCACGGCAACTTCCCGTTCGTGCTCAGGTGGAAAGGAAAGCAAACTGGGCCAACAAC
AAACCGTGATGTGGTCTTTTACAGAAAGAAATTGGATGCATTGAAACCGAGCGATGTGGAGTGGATTCCTGCAACCTACATGGACATTACGGCAGTACCA
GAAACTATTAGAGACAGTTTGATTTTGGGGAGATCGAAGACGATGCTCATATGCTTTGACAAGGCCGAGAGACACCTGCCTGACCGCTGCTTGAGGCAGT
ATGGCATGTTACAATCCATCCCGGAAGATGTCCTCCGATGGGTAAGAAAGAGTCGAGGAGTTGATGGAGGTGTGGACTTGTCTGGGAAAATGGAGCCCGA
ACTTAATGAATGGGCTAGTCGACATCTCCATATCGTTGAAGGCACTGATGCTGTGGCCGACGAAACTGTGTACATGGAATGGTACTTGAGAATCACTAGG
AGAGTGGTTGGGAGACCTATATCACTGTCATCTGAGTTCCAGAGAACGATTGCTGGGATAAGAGAGATTGCTTTCTTGGCGGATTCATTTTCGACAGAAG
GGTTGGATGGGGAACAATTCGAGTCGATTTCAAGGATCAGATATATTGCACAGGGCTGTTTGAGGGATCAGTCTGGAAGTTCGGCTGCAGCAGCATTACC
AATCGATACTCCACCGGTTGAAGTGGTGAAAAGGATTAGGGGGAAGGAGAGGGTTAGAAGAAATGGTGAGAAACGCCGGAGAAAAGACGAGATAGTGGAG
TATCAGGAAGGCGTTCTGGATGATGATCCATCTCAACACTTCTATGCTGGAGTTGTAGAGGTTGATCCATTACATGCAGTAGTCTGTACAGATGCTGAGA
TCATTTCGTTGCAGCAGCGCGATGCAGCTTCCAATATGGACATTGATGCTCAGTATTTATCTAGGTTGTCTGACGAGGATGAAAATAAAAAGTTAACTAT
TTGTCTCTCTAATGTTGCAACTATTGAGTTGAAGGATTCTGAAGTCTGTGACAGAATAACTGCAGAGGCTGCTGATTCTGAGCCTAATGATCAAACTGAG
AAGAATGACTCAAAGCCGTTCCAGGGTGGAGTTAATTCTCATATCTTTGAGGAAGAGACGGCTAATCTGACCAAAATGGCTGGTGAGCTTCCTTACGTGG
TAAGTGAATTGCAGAAACCTTCAGATGGAACTACAATGACGGATGAAGGTGCAATGAGTTATGCAAGTGAAATGGCCAGCGATTTGCAGCATTCTGGGAA
TGACTTGTATCCTTCTTCTGATGTCAAACTAGAGGTCAATGAAATGAAGGCCCCTGACGCAACTAATGGAAAGGACGTCAAAGATTTGCATGTTTCTGGT
GAAACTGAAACGAAGCATTTGACCGACGACGATAATCATTCCAAGATTTGA
AA sequence
>Lus10006393 pacid=23162663 polypeptide=Lus10006393 locus=Lus10006393.g ID=Lus10006393.BGIv1.0 annot-version=v1.0
MDVSPGPVDPSVLYEQDKHVSSAVWDGQCWCHFYLNIEQRPKLNRDPLHGNFPFVLRWKGKQTGPTTNRDVVFYRKKLDALKPSDVEWIPATYMDITAVP
ETIRDSLILGRSKTMLICFDKAERHLPDRCLRQYGMLQSIPEDVLRWVRKSRGVDGGVDLSGKMEPELNEWASRHLHIVEGTDAVADETVYMEWYLRITR
RVVGRPISLSSEFQRTIAGIREIAFLADSFSTEGLDGEQFESISRIRYIAQGCLRDQSGSSAAAALPIDTPPVEVVKRIRGKERVRRNGEKRRRKDEIVE
YQEGVLDDDPSQHFYAGVVEVDPLHAVVCTDAEIISLQQRDAASNMDIDAQYLSRLSDEDENKKLTICLSNVATIELKDSEVCDRITAEAADSEPNDQTE
KNDSKPFQGGVNSHIFEEETANLTKMAGELPYVVSELQKPSDGTTMTDEGAMSYASEMASDLQHSGNDLYPSSDVKLEVNEMKAPDATNGKDVKDLHVSG
ETETKHLTDDDNHSKI

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT2G04865 Aminotransferase-like, plant m... Lus10006393
[exp]
0 1
AT2G32760 unknown protein Lus10037826
[exp]
2.6 0.8760
AT5G37590 Tetratricopeptide repeat (TPR)... Lus10020809
[exp]
5.8 0.8746
AT5G05080 ATUBC22, UBC22 ubiquitin-conjugating enzyme 2... Lus10012110
[exp]
6.5 0.8301
AT2G02880 mucin-related (.1) Lus10030486
[exp]
8.0 0.8289
Lus10017572
[exp]
8.8 0.8417
AT3G51070 S-adenosyl-L-methionine-depend... Lus10028354
[exp]
9.3 0.8537
AT2G02000 GAD3 glutamate decarboxylase 3 (.1) Lus10009116
[exp]
13.6 0.8422
AT1G10320 C3HZnF Zinc finger C-x8-C-x5-C-x3-H t... Lus10010687
[exp]
17.5 0.8320
AT4G02210 unknown protein Lus10042596
[exp]
18.4 0.8305
AT3G25060 Tetratricopeptide repeat (TPR)... Lus10038187
[exp]
19.3 0.8153

Lus10006393 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.