Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G07800 177 / 6e-56 Thymidine kinase (.1) AT5G23070 157 / 7e-48 Thymidine kinase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012347 [exp] 254 / 2e-86 AT3G07800 303 / 4e-105 Thymidine kinase (.1) Lus10039055 [exp] 167 / 1e-51 AT5G23070 309 / 9e-106 Thymidine kinase (.1) Lus10038804 [exp] 157 / 1e-44 AT5G64320 367 / 3e-115 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10016925 [exp] 39 / 0.0002 AT5G23070 58 / 1e-11 Thymidine kinase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G222300 [exp] 197 / 2e-64 AT3G07800 316 / 2e-110 Thymidine kinase (.1) Potri.016G009951 [exp] 177 / 1e-55 AT3G07800 292 / 7e-100 Thymidine kinase (.1) Potri.006G015800 [exp] 173 / 4e-54 AT5G23070 306 / 8e-105 Thymidine kinase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00265 [flax] [poplar] TK Thymidine kinase
Representative CDS sequence Show only first row Show all	>Lus10006394 pacid=23162654 polypeptide=Lus10006394 locus=Lus10006394.g ID=Lus10006394.BGIv1.0 annot-version=v1.0 ATGGCCGCATCAAAGTCCTTTTCTGCTTTCAGTTTGTCCGACGGCGGCCGCGACCTCCTCGGGAAGTCTAGCGCCAGTGAGGTACATGTCATCGTTGGCC CCATGTTCGCTGGGAAAACCACTGCTCTGCTCCGTCGCATCAAATCTGAAATCAACAGCGGAAGAAATGTCGCAATGGTGAAGTCGAGCAGGGATAATAG GTATGCTATAGATTCAGTGGTGTCACACGATGGTGCGAAGTTCCGTTGCTGGGCGTTGAATGATCTGACTTCCTTTCATTCCAAACTGGGCACAATTCTT CATGATCTATACGATTTCTGCTGCAAAGCTGCTGATGAAGACGGCAAGATTGTCATAGTGGCAGGTCTTGATGGAGATTACTTGAGGAGGAGCTTTGGAT CCGTGCTAGATGTAGTACCGCTGGCTGACACTGACAAAGCTAACAGCAAGGTGCGAACTTTGCTGCGTTACATCAATGGAGAAGTGGTTAAGGAAGTTAC AAAGGGTGCACTCGAATCTTCCAAAACCAGGGTTCATGCCTCTTCCTCTAATGCTGCGGCTGTTAAAGTTGCTTAA
AA sequence Show only first row Show all	>Lus10006394 pacid=23162654 polypeptide=Lus10006394 locus=Lus10006394.g ID=Lus10006394.BGIv1.0 annot-version=v1.0 MAASKSFSAFSLSDGGRDLLGKSSASEVHVIVGPMFAGKTTALLRRIKSEINSGRNVAMVKSSRDNRYAIDSVVSHDGAKFRCWALNDLTSFHSKLGTIL HDLYDFCCKAADEDGKIVIVAGLDGDYLRRSFGSVLDVVPLADTDKANSKVRTLLRYINGEVVKEVTKGALESSKTRVHASSSNAAAVKVA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G07800			Thymidine kinase (.1)		Lus10006394 [exp]	0	1
AT1G05850		CTL1, HOT2, ERH...	POM-POM1, SENSITIVE TO HOT TEM...		Lus10041282 [exp]	2.4	0.7325
AT3G08950		HCC1	homologue of the copper chaper...		Lus10002848 [exp]	19.4	0.6904
AT3G46580		MBD05, MDB5, MD...	METHYL-CPG-BINDING DOMAIN PROT...		Lus10002234 [exp]	37.3	0.6571
AT4G05020		NDB2	NAD(P)H dehydrogenase B2 (.1),...		Lus10020087 [exp]	45.0	0.7254
AT5G65060	MADS	FCL3, MAF3, AGL...	MADS AFFECTING FLOWERING 3, AG...		Lus10037038 [exp]	65.2	0.6381
AT1G69380		RRG	RETARDED ROOT GROWTH, Protein ...		Lus10036803 [exp]	79.0	0.6760
AT1G52240		PIRF1, ATROPGEF...	phytochrome interacting RopGEF...		Lus10025794 [exp]	88.6	0.6613
AT1G53210			sodium/calcium exchanger famil...		Lus10017657 [exp]	109.7	0.6258
AT4G27300			S-locus lectin protein kinase ...		Lus10016864 [exp]	111.6	0.6666
AT2G47600		ATMHX1, ATMHX	MAGNESIUM/PROTON EXCHANGER 1, ...		Lus10030365 [exp]	136.5	0.6418

Compare expression of checked genes

Lus10006394 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.