Plant FIBer expression Database

Lus10006395 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10033051
[exp]
320 / 2e-112 ND /
Lus10003831
[exp]
235 / 5e-77 ND /
Lus10024749
[exp]
229 / 6e-77 ND /
Lus10042590
[exp]
223 / 3e-74 ND /
Lus10039395
[exp]
193 / 2e-62 ND /
Lus10032910
[exp]
184 / 1e-58 ND /
Lus10025417
[exp]
169 / 3e-53 ND /
Lus10004816
[exp]
155 / 1e-45 AT5G01470 342 / 6e-118 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3)
Lus10027052
[exp]
144 / 1e-44 ND /
Poplar homologues

No hit found
PFAM info
Representative CDS sequence
>Lus10006395 pacid=23162624 polypeptide=Lus10006395 locus=Lus10006395.g ID=Lus10006395.BGIv1.0 annot-version=v1.0
ATGAATATGGAAGTTGATGCCAGTGACGAAATTGATTACTCCGACTGGTTCTTATCTGATGATGTGTACGACACTATCGGTGAAGTGGCGCAAGCAGCAA
AACAGATTGTTTTAACGCTTAATTTCCATCTGATCAATGGGTCCAACAAAAGCAATGACTCGGAAAAGGAGTGTCGGGTGTATCTTTATTGCTCACGTGG
ACCTGTTCGCAAGTCTGAGGGTTCACATCCGCTGAAACATGCTATGAAGTCAAAGAAGTGTAATTGCCCATTCGGACTTGCCGTGCGGTCAAGGGTGGTA
GATTGCGAGTGGAAGTATTTTATTGACGGAGTCAGAGACATAAAGAACCCTGATAAGTCGAAGAGGTACCACAATCATCCTCTGATTCATTTCACTGAAG
TAAGCACGGAAAGCAATCCGTTATCAGATGAGGCGAAAAAAGATATTCGGGATATGGTGGCGGTTCACACACAACCGAATAAGATCAGGTATTCTTTGAA
TAAGAAGTTCAACACTCGTCACAATATGAATCAGATTTACAACGAGTCATACAAGATTAGAAAGGAGAAATTAGATGGTTTGGATCCGATGGAGTGGACT
TATCCGACTCATAGCCGCCGAGTAACTCCAACTCGCCGTCATCTGACATAA
AA sequence
>Lus10006395 pacid=23162624 polypeptide=Lus10006395 locus=Lus10006395.g ID=Lus10006395.BGIv1.0 annot-version=v1.0
MNMEVDASDEIDYSDWFLSDDVYDTIGEVAQAAKQIVLTLNFHLINGSNKSNDSEKECRVYLYCSRGPVRKSEGSHPLKHAMKSKKCNCPFGLAVRSRVV
DCEWKYFIDGVRDIKNPDKSKRYHNHPLIHFTEVSTESNPLSDEAKKDIRDMVAVHTQPNKIRYSLNKKFNTRHNMNQIYNESYKIRKEKLDGLDPMEWT
YPTHSRRVTPTRRHLT

DESeq2's median of ratios [FLAX]

Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
Lus10006395
[exp]
0 1
AT5G15630 IRX6, COBL4 IRREGULAR XYLEM 6, COBRA-LIKE4... Lus10021142
[exp]
2.0 1.0000
Lus10036765
[exp]
2.8 1.0000
AT2G16190 unknown protein Lus10011284
[exp]
3.5 1.0000
AT3G55500 ATHEXPALPHA1.7,... EXPANSIN 16, expansin A16 (.1) Lus10014406
[exp]
3.9 0.9852
AT3G54200 Late embryogenesis abundant (L... Lus10031554
[exp]
4.0 1.0000
AT4G39250 MYB RSM2, ATRL1 RADIALIS-LIKE SANT/MYB 2, RAD-... Lus10023568
[exp]
5.5 0.9794
AT3G56710 SIB1 sigma factor binding protein 1... Lus10026165
[exp]
5.9 0.9791
Lus10038080
[exp]
6.7 0.9712
AT3G14570 ATGSL4, ATGSL04 glucan synthase-like 4 (.1.2) Lus10026188
[exp]
7.1 0.9694
AT2G13600 Pentatricopeptide repeat (PPR)... Lus10026811
[exp]
8.0 0.9790

Lus10006395 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.