Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G07810 335 / 3e-112 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT5G47620 298 / 1e-98 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3), RNA-binding (RRM/RBD/RNP motifs) family protein (.4) AT4G26650 296 / 2e-97 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT5G55550 282 / 3e-92 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3), RNA-binding (RRM/RBD/RNP motifs) family protein (.4) AT4G14300 225 / 2e-70 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT2G33410 221 / 7e-69 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT1G17640 179 / 2e-53 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT1G58470 172 / 2e-50 XF41, ATRBP1 RNA-binding protein 1 (.1) AT3G13224 155 / 3e-44 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT5G40490 153 / 7e-43 RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012348 [exp] 449 / 1e-156 AT3G07810 436 / 5e-149 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10000537 [exp] 322 / 8e-107 AT3G07810 420 / 8e-143 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10043168 [exp] 321 / 1e-106 AT3G07810 456 / 2e-157 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10017555 [exp] 321 / 2e-106 AT3G07810 423 / 7e-144 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10032579 [exp] 317 / 3e-105 AT3G07810 447 / 8e-154 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10039053 [exp] 313 / 5e-104 AT3G07810 417 / 1e-142 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10038806 [exp] 314 / 1e-103 AT3G07810 417 / 2e-141 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10039054 [exp] 312 / 1e-103 AT3G07810 428 / 4e-147 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10022889 [exp] 232 / 2e-73 AT4G14300 315 / 9e-105 RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G161600 [exp] 346 / 1e-116 AT3G07810 498 / 3e-174 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.002G222400 [exp] 342 / 4e-115 AT3G07810 439 / 8e-151 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.006G015700 [exp] 332 / 3e-111 AT3G07810 447 / 8e-154 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.016G010200 [exp] 330 / 3e-110 AT3G07810 413 / 2e-140 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.001G361300 [exp] 323 / 7e-108 AT3G07810 433 / 1e-148 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.011G088100 [exp] 322 / 2e-107 AT3G07810 428 / 1e-146 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.010G067500 [exp] 244 / 4e-77 AT4G14300 302 / 7e-99 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.008G170400 [exp] 240 / 8e-76 AT4G14300 317 / 2e-104 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.002G258600 [exp] 233 / 2e-73 AT4G14300 277 / 1e-89 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.014G195300 [exp] 230 / 2e-72 AT4G14300 305 / 2e-100 RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [flax] [poplar] RRM PF00076 [flax] [poplar] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Lus10006396 pacid=23162658 polypeptide=Lus10006396 locus=Lus10006396.g ID=Lus10006396.BGIv1.0 annot-version=v1.0 ATGCAAGCGTCAGCAGAGAATGGGAAGTTATTCATCGGCGGGATATCGTGGGACACAAACGAAGACCGGCTCCGAGAATATTTCGAGTCGTTCGGGGATG TCGTTGAAGCTGTAATAATGAAGGATCGGACCACCGGCCGTGCCCGTGGCTTTGGATTTGTGGTCTTCGCCGATGGAGCTGTGGCCGAGCGTGTCACTCA AGAGAAACACAGCATCGATGGAAGAATGGTTGAGGCAAAGAGAGCAGTTCCAAAGGATGATCAGAACATTGCAAACAGAAGTCCCAGCAGTCTCCAATAT GGTTCTCCGGGTCAAGGAAGGACTCGGAAGATATTTGTAGGAGGTTTAGCATCCACAATTACAGAGACCGATTTCAGAACTTACTTCGAGCAGTTCGGAA CGATCATAGACGTGGTGGTTATGTACGATCACAACACGCAGAGGCCGAGAGGGTTCGGATTCATTACTTATGACTCGGAGGAGGCGGTGGACAAAGTCCT GCTCTTGAAGACTTTCCATGAGCTGAATGGTAAAATGGTGGAGGTCAAGCGAGCAGTTCCCAAAGAGCTATCTCCAGGTGGTGGTCCGAGCCGCGGTAGC ACCTCCCCACTAGGTGGGTATGTGAATGGCTACGGTGGTCTTAGTAGGGCTAGTAGCTTTCTTAATGGCTACAATCAAGGGTACAACCCGAACACAGTTG GCTATGGACTTCGAATGGACCAAGGTGGCTATCGAAGCAATAGCAGGAACAATGTGTTGATCAATCCTCCTGCATCATCGGCTGCTGGTTTCGAAGGAAC TTTCGCGGATCACCTTTACGTTGGAGGTGGGGGTTCCGAAGATTACGGAGAACCAACTTGGCGATCTTCTGATATAGATGGAGGAGGTGGGACGTTTGGT TACAACAGTCAGGGCAGCCTTCCAATTGGCAACAATGCCGGCCCGGATGTTGCAGTGAAAAGCCCTTCTCCTGGTTTTGTTGGTGGCTATAGTGTTAACA AAAGACAGACAAATAGAGGTAAAGAATCATACTAG
AA sequence Show only first row Show all	>Lus10006396 pacid=23162658 polypeptide=Lus10006396 locus=Lus10006396.g ID=Lus10006396.BGIv1.0 annot-version=v1.0 MQASAENGKLFIGGISWDTNEDRLREYFESFGDVVEAVIMKDRTTGRARGFGFVVFADGAVAERVTQEKHSIDGRMVEAKRAVPKDDQNIANRSPSSLQY GSPGQGRTRKIFVGGLASTITETDFRTYFEQFGTIIDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLLKTFHELNGKMVEVKRAVPKELSPGGGPSRGS TSPLGGYVNGYGGLSRASSFLNGYNQGYNPNTVGYGLRMDQGGYRSNSRNNVLINPPASSAAGFEGTFADHLYVGGGGSEDYGEPTWRSSDIDGGGGTFG YNSQGSLPIGNNAGPDVAVKSPSPGFVGGYSVNKRQTNRGKESY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G07810			RNA-binding (RRM/RBD/RNP motif...		Lus10006396 [exp]	0	1
AT1G62020			Coatomer, alpha subunit (.1)		Lus10016481 [exp]	1.4	0.9419
AT3G07810			RNA-binding (RRM/RBD/RNP motif...		Lus10012348 [exp]	1.4	0.9390
AT3G07810			RNA-binding (RRM/RBD/RNP motif...		Lus10039053 [exp]	3.0	0.9182
AT3G07810			RNA-binding (RRM/RBD/RNP motif...		Lus10043168 [exp]	5.9	0.9057
AT1G62020			Coatomer, alpha subunit (.1)		Lus10040752 [exp]	8.0	0.9166
AT2G47650		UXS4	UDP-xylose synthase 4 (.1.2)		Lus10008217 [exp]	8.0	0.8774
AT2G21520			Sec14p-like phosphatidylinosit...		Lus10023546 [exp]	8.7	0.8802
AT2G01970			Endomembrane protein 70 protei...		Lus10026371 [exp]	8.8	0.9093
AT2G21520			Sec14p-like phosphatidylinosit...		Lus10040431 [exp]	9.8	0.8848
AT1G80510			Transmembrane amino acid trans...		Lus10034093 [exp]	11.5	0.8962

Compare expression of checked genes

Lus10006396 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.