Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G47530 244 / 7e-79 Auxin-responsive family protein (.1) AT5G35735 245 / 8e-79 Auxin-responsive family protein (.1) AT4G12980 237 / 7e-76 Auxin-responsive family protein (.1) AT3G25290 236 / 2e-75 Auxin-responsive family protein (.1.2) AT4G17280 236 / 2e-75 Auxin-responsive family protein (.1) AT3G59070 136 / 1e-36 Cytochrome b561/ferric reductase transmembrane with DOMON related domain (.1) AT2G04850 132 / 1e-35 Auxin-responsive family protein (.1) AT3G07570 119 / 4e-31 Cytochrome b561/ferric reductase transmembrane with DOMON related domain (.1) AT3G61750 103 / 4e-25 Cytochrome b561/ferric reductase transmembrane with DOMON related domain (.1) AT4G18260 64 / 4e-11 Cytochrome b561/ferric reductase transmembrane protein family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012350 [exp] 375 / 4e-130 AT5G35735 418 / 3e-145 Auxin-responsive family protein (.1) Lus10002274 [exp] 315 / 3e-106 AT5G47530 432 / 4e-151 Auxin-responsive family protein (.1) Lus10001734 [exp] 310 / 4e-104 AT5G47530 422 / 9e-147 Auxin-responsive family protein (.1) Lus10038225 [exp] 223 / 1e-72 AT3G25290 283 / 6e-95 Auxin-responsive family protein (.1.2) Lus10025877 [exp] 226 / 2e-72 AT3G25290 387 / 2e-134 Auxin-responsive family protein (.1.2) Lus10017564 [exp] 227 / 8e-72 AT5G47530 419 / 8e-146 Auxin-responsive family protein (.1) Lus10010498 [exp] 217 / 8e-68 AT5G47530 412 / 1e-142 Auxin-responsive family protein (.1) Lus10001162 [exp] 148 / 2e-41 AT2G04850 563 / 0.0 Auxin-responsive family protein (.1) Lus10001736 [exp] 145 / 2e-40 AT2G04850 559 / 0.0 Auxin-responsive family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G222700 [exp] 259 / 1e-84 AT5G35735 369 / 8e-126 Auxin-responsive family protein (.1) Potri.016G010900 [exp] 259 / 2e-84 AT5G47530 498 / 8e-177 Auxin-responsive family protein (.1) Potri.006G015000 [exp] 258 / 6e-84 AT5G47530 513 / 0.0 Auxin-responsive family protein (.1) Potri.010G156200 [exp] 257 / 7e-84 AT5G47530 472 / 1e-166 Auxin-responsive family protein (.1) Potri.014G162000 [exp] 257 / 9e-84 AT5G47530 369 / 2e-126 Auxin-responsive family protein (.1) Potri.010G156600 [exp] 254 / 1e-82 AT5G47530 497 / 2e-176 Auxin-responsive family protein (.1) Potri.002G249300 [exp] 232 / 4e-74 AT3G25290 452 / 6e-159 Auxin-responsive family protein (.1.2) Potri.019G095800 [exp] 174 / 2e-51 AT5G47530 310 / 7e-103 Auxin-responsive family protein (.1) Potri.001G031600 [exp] 174 / 2e-51 AT5G47530 312 / 7e-104 Auxin-responsive family protein (.1) Potri.019G096300 [exp] 174 / 2e-51 AT5G47530 310 / 7e-103 Auxin-responsive family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0328 [flax] [poplar] 2heme_cytochrom PF03188 [flax] [poplar] Cytochrom_B561 Eukaryotic cytochrome b561
Representative CDS sequence Show only first row Show all	>Lus10006398 pacid=23162645 polypeptide=Lus10006398 locus=Lus10006398.g ID=Lus10006398.BGIv1.0 annot-version=v1.0 ATGGATAACAAGTTACTGAAGTGTTTAATCTTTTCTGGGATCCTCTTCCTCGCCATGTTTGCTTCTCCATCACAGGCTCAAACTTGCAACGGCCAAAGCT TCTCAAGAAACCAAGTCTACTCAACTTGTGTAGATCTCCCAGCTCTGAGCTCTTTCCTTCACTGGAATTTCCACCAAGCGAACAACACAGCAGACATAGC CTTCAGGAAGACTGGAACCACCACTTCCAGCTGGGCTTGCTGGGGTCCATCTGAATTCCAATCTCTTACTGGTGCTACCACTGCTTCTGGAGGTGCTGGC AACTCAAGGCTCCGCAAGAGGAATACTCATGGAGTTTTGAGTGCGGTGAGTTGGGGAATTCTGATGCCACTGGGAGCAATCATAGCAAGGTACATGAAGG TGTTCAAGGCAGCAAACCCAGCATGGTTCTATCTCCACGTTGCTTGCCAATTGTCTGCTTACATCGTTGGGGTTGCTGGTTGGGGAACTGGTCTCAAACT TGGCAGCGACAGCGTTGGAGTTGAGTACAACAAGCACAGAAACATTGGCATCACCCTCTTCTGCTTTGGTACCCTTCAGATGTTTGCCCTGCTGTTGAGG CCAAAGCCAGACCACAAGTACAGACTGTACTGGAACATGTACCACTACGCCATCGGATACGCAACCATCAGTCTCAGCATCGTTAATGTCTACGAGGGAC TCGACATTCTCGACCCTGCCAAGAAATGGAAGACCGCTTACACCGCTATCATCATCGTGTTGGGGGCCATCGCTCTGGTGTTGGAAGCCATCACTTGGCT GATTGTCATCAAGAGGAAGCAAGCTGTTAACTCTGCTGATAAATATGCCAATGGTGGAGCTAATGGAAATGGTCACAGAACACATCAGGAGGCCTGA
AA sequence Show only first row Show all	>Lus10006398 pacid=23162645 polypeptide=Lus10006398 locus=Lus10006398.g ID=Lus10006398.BGIv1.0 annot-version=v1.0 MDNKLLKCLIFSGILFLAMFASPSQAQTCNGQSFSRNQVYSTCVDLPALSSFLHWNFHQANNTADIAFRKTGTTTSSWACWGPSEFQSLTGATTASGGAG NSRLRKRNTHGVLSAVSWGILMPLGAIIARYMKVFKAANPAWFYLHVACQLSAYIVGVAGWGTGLKLGSDSVGVEYNKHRNIGITLFCFGTLQMFALLLR PKPDHKYRLYWNMYHYAIGYATISLSIVNVYEGLDILDPAKKWKTAYTAIIIVLGAIALVLEAITWLIVIKRKQAVNSADKYANGGANGNGHRTHQEA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G47530			Auxin-responsive family protei...		Lus10006398 [exp]	0	1
AT4G24160			alpha/beta-Hydrolases superfam...		Lus10024310 [exp]	1.0	0.9385
AT5G07100	WRKY	WRKY26	WRKY DNA-binding protein 26 (....		Lus10042243 [exp]	2.0	0.9171
AT2G23460		ATXLG1, XLG1	extra-large G-protein 1 (.1)		Lus10023838 [exp]	2.2	0.8995
AT2G38470	WRKY	ATWRKY33, WRKY3...	WRKY DNA-binding protein 33 (....		Lus10001265 [exp]	5.2	0.9051
AT1G80840	WRKY	ATWRKY40, WRKY4...	WRKY DNA-binding protein 40 (....		Lus10002309 [exp]	6.0	0.9006
AT4G21390		B120	S-locus lectin protein kinase ...		Lus10018408 [exp]	6.5	0.8504
AT2G17890		CPK16	calcium-dependent protein kina...		Lus10028459 [exp]	6.9	0.8824
AT3G54020		AtIPCS1	Arabidopsis Inositol phosphory...		Lus10027742 [exp]	7.3	0.8554
AT4G28400			Protein phosphatase 2C family ...		Lus10039853 [exp]	7.4	0.8715
AT1G59590		ZCF37	ZCF37 (.1)		Lus10007746 [exp]	7.7	0.8335

Compare expression of checked genes

Lus10006398 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.