Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G04780 200 / 6e-64 FLA7 FASCICLIN-like arabinoogalactan 7 (.1.2) AT5G60490 97 / 6e-24 FLA12 FASCICLIN-like arabinogalactan-protein 12 (.1) AT2G20520 91 / 9e-22 FLA6 FASCICLIN-like arabinogalactan 6 (.1) AT5G03170 91 / 1e-21 ATFLA11, FLA11, IRX13 ARABIDOPSIS FASCICLIN-LIKE ARABINOGALACTAN-PROTEIN 11, FASCICLIN-like arabinogalactan-protein 11 (.1) AT1G03870 86 / 6e-20 FLA9 FASCICLIN-like arabinoogalactan 9 (.1) AT5G44130 81 / 8e-18 FLA13 FASCICLIN-like arabinogalactan protein 13 precursor (.1) AT3G46550 74 / 6e-15 FLA4, SOS5 salt overly sensitive 5, fasciclin-like arabinogalactan-protein 4, Fasciclin-like arabinogalactan family protein (.1) AT3G60900 69 / 3e-13 FLA10 FASCICLIN-like arabinogalactan-protein 10 (.1) AT2G45470 66 / 5e-12 AGP8, FLA8 FASCICLIN-like arabinogalactan protein 8 (.1) AT5G55730 55 / 2e-08 FLA1 FASCICLIN-like arabinogalactan 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012351 [exp] 302 / 1e-103 AT2G04780 223 / 9e-73 FASCICLIN-like arabinoogalactan 7 (.1.2) Lus10002273 [exp] 243 / 2e-80 AT2G04780 233 / 2e-76 FASCICLIN-like arabinoogalactan 7 (.1.2) Lus10001733 [exp] 242 / 4e-80 AT2G04780 231 / 4e-76 FASCICLIN-like arabinoogalactan 7 (.1.2) Lus10017696 [exp] 93 / 2e-22 AT2G20520 244 / 2e-81 FASCICLIN-like arabinogalactan 6 (.1) Lus10033651 [exp] 91 / 1e-21 AT2G20520 234 / 2e-77 FASCICLIN-like arabinogalactan 6 (.1) Lus10002978 [exp] 87 / 5e-20 AT5G03170 209 / 1e-67 ARABIDOPSIS FASCICLIN-LIKE ARABINOGALACTAN-PROTEIN 11, FASCICLIN-like arabinogalactan-protein 11 (.1) Lus10026499 [exp] 84 / 4e-19 AT5G03170 291 / 5e-100 ARABIDOPSIS FASCICLIN-LIKE ARABINOGALACTAN-PROTEIN 11, FASCICLIN-like arabinogalactan-protein 11 (.1) Lus10036111 [exp] 84 / 7e-19 AT5G03170 209 / 1e-67 ARABIDOPSIS FASCICLIN-LIKE ARABINOGALACTAN-PROTEIN 11, FASCICLIN-like arabinogalactan-protein 11 (.1) Lus10019929 [exp] 82 / 3e-18 AT5G03170 295 / 2e-101 ARABIDOPSIS FASCICLIN-LIKE ARABINOGALACTAN-PROTEIN 11, FASCICLIN-like arabinogalactan-protein 11 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G162900 [exp] 226 / 7e-74 AT2G04780 228 / 1e-74 FASCICLIN-like arabinoogalactan 7 (.1.2) Potri.002G223300 [exp] 218 / 8e-71 AT2G04780 228 / 1e-74 FASCICLIN-like arabinoogalactan 7 (.1.2) Potri.013G120600 [exp] 95 / 3e-23 AT5G44130 182 / 3e-57 FASCICLIN-like arabinogalactan protein 13 precursor (.1) Potri.016G088700 [exp] 92 / 4e-22 AT5G03170 203 / 2e-65 ARABIDOPSIS FASCICLIN-LIKE ARABINOGALACTAN-PROTEIN 11, FASCICLIN-like arabinogalactan-protein 11 (.1) Potri.006G129200 [exp] 91 / 8e-22 AT5G03170 199 / 9e-64 ARABIDOPSIS FASCICLIN-LIKE ARABINOGALACTAN-PROTEIN 11, FASCICLIN-like arabinogalactan-protein 11 (.1) Potri.001G320800 [exp] 91 / 9e-22 AT5G60490 189 / 5e-60 FASCICLIN-like arabinogalactan-protein 12 (.1) Potri.019G093300 [exp] 84 / 3e-19 AT5G44130 173 / 9e-54 FASCICLIN-like arabinogalactan protein 13 precursor (.1) Potri.012G127900 [exp] 84 / 3e-19 AT5G60490 207 / 6e-67 FASCICLIN-like arabinogalactan-protein 12 (.1) Potri.012G015032 [exp] 84 / 5e-19 AT5G60490 179 / 2e-55 FASCICLIN-like arabinogalactan-protein 12 (.1) Potri.015G129400 [exp] 83 / 1e-18 AT5G60490 206 / 2e-66 FASCICLIN-like arabinogalactan-protein 12 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02469 [flax] [poplar] Fasciclin Fasciclin domain
Representative CDS sequence Show only first row Show all	>Lus10006399 pacid=23162651 polypeptide=Lus10006399 locus=Lus10006399.g ID=Lus10006399.BGIv1.0 annot-version=v1.0 ATGGAATTTTCCAGAAAATTCTTGGTCTTCTTCCTATTAGCTGCACTTTCATCAACATCAACTGAATCCGCTACAAGTCCACCAGCACCAATATCATTCA GTCCAGCACCAGCACCAGCACCAACCTCACCATACGTAAACCTCACAGATTTACTCTCAGTAGCAGGTCCATTCCACACATTCCTAAACTACCTCCAATC CACAAAAGTAATCGACACATTCCAGAACCAAGCCAACGACACCGATCACGAACAAGGAATCACCATCTTCGTCCCTAAAGACAGCGCCTTTTCGAAGCTA AACAAGCCTCCTCTCCCTTCCTTATCAAATGTGTCATCAGACCAGCTGAAGCAGATCATGTTGTTCCACGCCTTGCCACATTACTACTCCTTTGCTGACT TCAAGAACCTCACTAGCAGCCCTGTCAGCACTTTTGCAGGCGATGGACAGTTTGGCCTCAACTTCACCTATGTGTCGGGATTGGTCAGGATCGATTCGGG TTGGAGTAAGACTAAGGTGACCAGCAGTGTCCACTCAACTGCACCTGTTGCTATTTACCAAGTTGATAAAGTCCTCCTCCCAGAAGCTGTCTTTGGCACT GATATTCCACCAATGCCTGCTCCTGCACCGGCTCCTGATGCCGGTCTAGCTCCTGATGCCGATAGTCCATCTGCTGATGCCACTGCTAAGGGAGGAAAAG CTTCAGCATCATCATCAGCAAGCTCTTCTGGTATTAGGTTTGGTGTGTGGAGCCAGCTGGTGTTGGCTGTGTCAGGAGTGATTGTGTTGCTATTGTAA
AA sequence Show only first row Show all	>Lus10006399 pacid=23162651 polypeptide=Lus10006399 locus=Lus10006399.g ID=Lus10006399.BGIv1.0 annot-version=v1.0 MEFSRKFLVFFLLAALSSTSTESATSPPAPISFSPAPAPAPTSPYVNLTDLLSVAGPFHTFLNYLQSTKVIDTFQNQANDTDHEQGITIFVPKDSAFSKL NKPPLPSLSNVSSDQLKQIMLFHALPHYYSFADFKNLTSSPVSTFAGDGQFGLNFTYVSGLVRIDSGWSKTKVTSSVHSTAPVAIYQVDKVLLPEAVFGT DIPPMPAPAPAPDAGLAPDADSPSADATAKGGKASASSSASSSGIRFGVWSQLVLAVSGVIVLLL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G04780		FLA7	FASCICLIN-like arabinoogalacta...		Lus10006399 [exp]	0	1
AT2G40320		TBL33	TRICHOME BIREFRINGENCE-LIKE 33...		Lus10017428 [exp]	5.9	0.9356
AT3G19460			Reticulon family protein (.1.2...		Lus10002815 [exp]	8.4	0.9128
AT4G11950			Protein of unknown function (D...		Lus10014138 [exp]	13.6	0.9291
AT3G15480			Protein of unknown function (D...		Lus10032662 [exp]	14.8	0.9309
AT2G40320		TBL33	TRICHOME BIREFRINGENCE-LIKE 33...		Lus10007528 [exp]	16.7	0.9142
AT3G23690	bHLH	bHLH077	basic helix-loop-helix (bHLH) ...		Lus10021968 [exp]	16.7	0.8999
AT2G28315			Nucleotide/sugar transporter f...		Lus10021464 [exp]	20.2	0.9277
AT1G77580			Plant protein of unknown funct...		Lus10010888 [exp]	22.0	0.8687
AT5G02640			unknown protein		Lus10025282 [exp]	22.6	0.9221
AT5G51490			Plant invertase/pectin methyle...		Lus10031720 [exp]	22.9	0.8997

Compare expression of checked genes

Lus10006399 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.