Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G07880 304 / 4e-105 SCN1 SUPERCENTIPEDE1, Immunoglobulin E-set superfamily protein (.1) AT1G62450 276 / 2e-94 Immunoglobulin E-set superfamily protein (.1) AT1G12070 260 / 3e-88 Immunoglobulin E-set superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012352 [exp] 433 / 4e-156 AT3G07880 308 / 6e-107 SUPERCENTIPEDE1, Immunoglobulin E-set superfamily protein (.1) Lus10001732 [exp] 369 / 5e-131 AT3G07880 310 / 6e-108 SUPERCENTIPEDE1, Immunoglobulin E-set superfamily protein (.1) Lus10002272 [exp] 360 / 3e-127 AT3G07880 309 / 1e-107 SUPERCENTIPEDE1, Immunoglobulin E-set superfamily protein (.1) Lus10003794 [exp] 301 / 1e-104 AT3G07880 306 / 2e-106 SUPERCENTIPEDE1, Immunoglobulin E-set superfamily protein (.1) Lus10027327 [exp] 301 / 4e-104 AT3G07880 303 / 2e-105 SUPERCENTIPEDE1, Immunoglobulin E-set superfamily protein (.1) Lus10039029 [exp] 296 / 4e-102 AT3G07880 300 / 5e-104 SUPERCENTIPEDE1, Immunoglobulin E-set superfamily protein (.1) Lus10010491 [exp] 271 / 3e-91 AT3G07880 274 / 9e-93 SUPERCENTIPEDE1, Immunoglobulin E-set superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G163000 [exp] 326 / 1e-113 AT3G07880 329 / 7e-115 SUPERCENTIPEDE1, Immunoglobulin E-set superfamily protein (.1) Potri.002G223200 [exp] 317 / 5e-110 AT3G07880 328 / 2e-114 SUPERCENTIPEDE1, Immunoglobulin E-set superfamily protein (.1) Potri.016G013700 [exp] 303 / 1e-104 AT3G07880 314 / 5e-109 SUPERCENTIPEDE1, Immunoglobulin E-set superfamily protein (.1) Potri.006G010500 [exp] 303 / 2e-104 AT3G07880 317 / 5e-110 SUPERCENTIPEDE1, Immunoglobulin E-set superfamily protein (.1) Potri.002G234600 [exp] 255 / 6e-86 AT3G07880 212 / 5e-69 SUPERCENTIPEDE1, Immunoglobulin E-set superfamily protein (.1) Potri.002G259200 [exp] 195 / 3e-62 AT3G07880 184 / 4e-58 SUPERCENTIPEDE1, Immunoglobulin E-set superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0159 [flax] [poplar] E-set PF02115 [flax] [poplar] Rho_GDI RHO protein GDP dissociation inhibitor
Representative CDS sequence Show only first row Show all	>Lus10006400 pacid=23162619 polypeptide=Lus10006400 locus=Lus10006400.g ID=Lus10006400.BGIv1.0 annot-version=v1.0 ATGTCTTTGGCTGTGTCAAGTTCAAGTAAGATGGGTTTGGATGACAAGGACGAGGGGAAGAATGATGAGCTTGAGAGGCATCTGGAAAATGGGGATGAAA GTGCAGATAAGGAGTCAAAGCACAGGAGCCAATCTTCCATGGATGGAGCTGATGACGACGAGGATGAGGATGAAGTAGACGACAAACTTGAGCTTGGTCC TCAGTACACTCTCAAGGAACAGCTCGAGAAGGATAAGGATGATGAGAGCCTGAGGAAATGGAAGGAACAGCTCCTTGGAAGTGTGGATTTTGATAACATT GGAGAAATTCTTGATCCGGAAGTGAAAATTCTTAGCCTATCTATTGTATCTCCTGATAGAGCTGATATCGTCCTGTCTATCCCCGAGGACGGAAAGCTAA AAGGCTCGTGGTTTACTTTGAAAGAAGGCAGTCCTTACAAGTTGAAGTTTGCATTCCAAGTTAGTAATAACATTGTATCTGGTCTCAAGTACACCAACAC TGTCTGGAAAACTGGTGTCAAGGTTGATGGCACTAAGGAGATGCTTGGAACCTTCAGTCCTCAGCCAGAGGCTTACATACATGAGATGCCAGAAGAGGTC ACTCCATCAGGCATGTTCGCTAGGGGATCGTATTCGGCTAGATCAAAGTTTGTTGATGATGATAACAAATGCTACTTGGAGATCAATTACACATTCGAGA TCCGGAAAGAATGGGCAGCCACTACATGA
AA sequence Show only first row Show all	>Lus10006400 pacid=23162619 polypeptide=Lus10006400 locus=Lus10006400.g ID=Lus10006400.BGIv1.0 annot-version=v1.0 MSLAVSSSSKMGLDDKDEGKNDELERHLENGDESADKESKHRSQSSMDGADDDEDEDEVDDKLELGPQYTLKEQLEKDKDDESLRKWKEQLLGSVDFDNI GEILDPEVKILSLSIVSPDRADIVLSIPEDGKLKGSWFTLKEGSPYKLKFAFQVSNNIVSGLKYTNTVWKTGVKVDGTKEMLGTFSPQPEAYIHEMPEEV TPSGMFARGSYSARSKFVDDDNKCYLEINYTFEIRKEWAATT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G07880		SCN1	SUPERCENTIPEDE1, Immunoglobuli...		Lus10006400 [exp]	0	1
AT3G07880		SCN1	SUPERCENTIPEDE1, Immunoglobuli...		Lus10012352 [exp]	11.5	0.7633
AT5G16660			unknown protein		Lus10026866 [exp]	12.3	0.8371
AT4G14870		SECE1	secE/sec61-gamma protein trans...		Lus10006118 [exp]	14.9	0.8231
AT1G68590			Ribosomal protein PSRP-3/Ycf65...		Lus10041469 [exp]	15.6	0.8593
AT2G13600			Pentatricopeptide repeat (PPR)...		Lus10015898 [exp]	17.2	0.7592
AT4G39150			DNAJ heat shock N-terminal dom...		Lus10017472 [exp]	19.8	0.7979
AT1G09900			Pentatricopeptide repeat (PPR-...		Lus10037012 [exp]	24.9	0.8384
AT1G80500			SNARE-like superfamily protein...		Lus10041670 [exp]	25.5	0.7410
AT5G64480			unknown protein		Lus10007107 [exp]	29.8	0.8307
AT5G27460			Tetratricopeptide repeat (TPR)...		Lus10020948 [exp]	31.0	0.8071

Compare expression of checked genes

Lus10006400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.