Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012353 [exp] 46 / 2e-06 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10006401 pacid=23162652 polypeptide=Lus10006401 locus=Lus10006401.g ID=Lus10006401.BGIv1.0 annot-version=v1.0 ATGGCCACCGTTGAGGTTGTATCGGCGCAAACCGCATTCCATGAGGAGAAACCCGCGGAAATAGCGGCGGCCGTCAAGGTTCAAGAGCAGGAGGAGCCAC CGGCTGAGGTGGCGGCGGATTCAACTCCTCCTCCTCCTTCTTCTCCTGCTCCGGTGGCTTCAGAAGAGCCAGAGAAGGAAGAAGAGAAGAAGGAGATCAC CACCGCTGACAAAGAAGAAGCAGCTGACGTGGTTCCCGAACAAGTTGAAGAGGTAGTTGTTGAGACCACGAAAGAGGTGGTCGTGGCTGAAGAAACAGAA CCTGAAGAAGAAGAAGAAGAAGAAGAAGAAGTGGAGAAGAAACCCGTTGATTTTGAAGAGGAAACCATGGTGGAGGAGCCTGCCGTCATTTCTGTCGAGG AGGCATCGGCGGTTGAGCCAGTGACGGTAGACGAACCAGCTGCCGGGCCCGGCGAAGGTGCTCCGGAGGAGAAGAAGGTGGTTCCGGTGGTGAAGACTGA GTGA
AA sequence Show only first row Show all	>Lus10006401 pacid=23162652 polypeptide=Lus10006401 locus=Lus10006401.g ID=Lus10006401.BGIv1.0 annot-version=v1.0 MATVEVVSAQTAFHEEKPAEIAAAVKVQEQEEPPAEVAADSTPPPPSSPAPVASEEPEKEEEKKEITTADKEEAADVVPEQVEEVVVETTKEVVVAEETE PEEEEEEEEEVEKKPVDFEEETMVEEPAVISVEEASAVEPVTVDEPAAGPGEGAPEEKKVVPVVKTE

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10006401 [exp]	0	1
AT4G24910			Protein of unknown function (D...		Lus10003160 [exp]	6.0	0.9395
AT4G24910			Protein of unknown function (D...		Lus10002345 [exp]	8.5	0.9372
AT1G44960			SNARE associated Golgi protein...		Lus10006050 [exp]	8.9	0.8899
AT4G23610			Late embryogenesis abundant (L...		Lus10027179 [exp]	9.0	0.9360
AT1G24620			EF hand calcium-binding protei...		Lus10028913 [exp]	10.6	0.9270
AT3G52760			Integral membrane Yip1 family ...		Lus10017054 [exp]	10.9	0.9272
AT2G17270		PHT3;3	phosphate transporter 3;3 (.1)		Lus10035975 [exp]	12.7	0.9287
					Lus10008008 [exp]	12.8	0.8411
AT2G28790			Pathogenesis-related thaumatin...		Lus10040843 [exp]	16.3	0.9188
AT5G17050		UGT78D2	UDP-glucosyl transferase 78D2 ...		Lus10025854 [exp]	17.1	0.9339

Compare expression of checked genes

Lus10006401 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.