Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G04790 172 / 1e-55 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012354 [exp] 312 / 8e-111 AT2G04790 184 / 3e-60 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G162700 [exp] 208 / 1e-69 AT2G04790 184 / 5e-60 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10006402 pacid=23162643 polypeptide=Lus10006402 locus=Lus10006402.g ID=Lus10006402.BGIv1.0 annot-version=v1.0 ATGGCGGGAAGTCATCATCAGCTGATCAAGGACGACATTTACGTGGCGGCAATGCCCTTACGAGCCACCAAAGGGCCTCCACAGCTGCTCATGTCCGCCG CTTACTCTCTCAATCTCAGCTGGGACTTGCAGCATTTCATGGTCATCATTCAACCCTCTCACCAGCCTGTTGTTGTGTTTGATTTTCAGCCAAAAGACCC GGAAAATTTGTTCACCGCCCTTGCAGTTATGTCTGGCAGATCAGTACCTGGGGCAGTTCATCGTAGGAAGATGACAAAGCTGCCAAGGACTAAATGTTGG CACGATGGTTCGTCACAAGATGCTGAAGAAGTTGCTGCTGAGTTTGGTAGAAATTGGATCACTGAACTGAAAGTTGGCCATCACGACTGTCGTCACTACA CAAATGGTTTGGTGGAGGCTCTCACTGGTGAAAAGTTGGTTCTAGAGCAGCTGAGAAGAAGAAATGCGGCGAGGGAAGGTCTTGTCAGCTGA
AA sequence Show only first row Show all	>Lus10006402 pacid=23162643 polypeptide=Lus10006402 locus=Lus10006402.g ID=Lus10006402.BGIv1.0 annot-version=v1.0 MAGSHHQLIKDDIYVAAMPLRATKGPPQLLMSAAYSLNLSWDLQHFMVIIQPSHQPVVVFDFQPKDPENLFTALAVMSGRSVPGAVHRRKMTKLPRTKCW HDGSSQDAEEVAAEFGRNWITELKVGHHDCRHYTNGLVEALTGEKLVLEQLRRRNAAREGLVS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G04790			unknown protein		Lus10006402 [exp]	0	1
AT5G57280		RID2	root initiation defective 2, S...		Lus10028960 [exp]	3.6	0.9192
AT2G34260		WDR55	human WDR55 \(WD40 repeat\) ho...		Lus10033342 [exp]	5.1	0.8821
AT2G26830		EMB1187	embryo defective 1187, Protein...		Lus10019424 [exp]	8.5	0.9027
AT3G56210			ARM repeat superfamily protein...		Lus10017416 [exp]	9.6	0.9125
AT1G15860			Domain of unknown function (DU...		Lus10019598 [exp]	10.7	0.8883
AT1G26910		RPL10B	ribosomal protein L10 B, Ribos...		Lus10015106 [exp]	11.6	0.9187
AT2G34260		WDR55	human WDR55 \(WD40 repeat\) ho...		Lus10034796 [exp]	12.2	0.8853
AT1G31910			GHMP kinase family protein (.1...		Lus10012122 [exp]	13.9	0.9087
AT5G37290			ARM repeat superfamily protein...		Lus10013386 [exp]	17.3	0.9068
AT5G09380			RNA polymerase III RPC4 (.1)		Lus10019022 [exp]	21.2	0.8907

Compare expression of checked genes

Lus10006402 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.