Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G07870 337 / 8e-115 F-box and associated interaction domains-containing protein (.1) AT4G12560 86 / 7e-19 CPR1, CPR30 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) AT3G23880 73 / 2e-14 F-box and associated interaction domains-containing protein (.1) AT3G06240 70 / 2e-13 F-box family protein (.1) AT1G53550 58 / 3e-09 F-box family protein (.1) AT1G32420 56 / 9e-09 F-box and associated interaction domains-containing protein (.1) AT1G49790 50 / 5e-07 F-box associated ubiquitination effector family protein (.1.2) AT4G22390 49 / 1e-06 F-box associated ubiquitination effector family protein (.1) AT4G09190 48 / 4e-06 F-box and associated interaction domains-containing protein (.1) AT1G26515 46 / 2e-05 F-box and associated interaction domains-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012355 [exp] 556 / 0 AT3G07870 393 / 2e-135 F-box and associated interaction domains-containing protein (.1) Lus10036105 [exp] 193 / 2e-58 AT3G07870 206 / 1e-61 F-box and associated interaction domains-containing protein (.1) Lus10012358 [exp] 130 / 1e-34 AT3G07870 181 / 3e-52 F-box and associated interaction domains-containing protein (.1) Lus10026789 [exp] 100 / 1e-25 AT3G07870 102 / 7e-26 F-box and associated interaction domains-containing protein (.1) Lus10038606 [exp] 100 / 4e-24 AT3G07870 112 / 1e-27 F-box and associated interaction domains-containing protein (.1) Lus10037892 [exp] 97 / 7e-23 AT3G06240 107 / 7e-26 F-box family protein (.1) Lus10038603 [exp] 93 / 4e-21 AT3G06240 110 / 2e-26 F-box family protein (.1) Lus10039024 [exp] 89 / 1e-19 AT4G12560 333 / 3e-111 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Lus10013873 [exp] 78 / 4e-16 AT3G06240 104 / 2e-24 F-box family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G162600 [exp] 407 / 3e-142 AT3G07870 467 / 9e-164 F-box and associated interaction domains-containing protein (.1) Potri.002G223000 [exp] 401 / 4e-140 AT3G07870 467 / 5e-164 F-box and associated interaction domains-containing protein (.1) Potri.013G053301 [exp] 199 / 1e-61 AT3G07870 258 / 7e-83 F-box and associated interaction domains-containing protein (.1) Potri.011G037312 [exp] 112 / 4e-28 AT3G07870 134 / 3e-35 F-box and associated interaction domains-containing protein (.1) Potri.011G037200 [exp] 111 / 5e-28 AT3G07870 134 / 6e-35 F-box and associated interaction domains-containing protein (.1) Potri.006G011400 [exp] 103 / 3e-25 AT4G12560 142 / 2e-38 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.008G215800 [exp] 103 / 4e-25 AT3G07870 101 / 3e-23 F-box and associated interaction domains-containing protein (.1) Potri.008G215901 [exp] 102 / 1e-24 AT3G07870 103 / 3e-24 F-box and associated interaction domains-containing protein (.1) Potri.008G216223 [exp] 100 / 2e-24 AT3G07870 93 / 4e-21 F-box and associated interaction domains-containing protein (.1) Potri.001G129200 [exp] 100 / 6e-24 AT3G07870 110 / 8e-27 F-box and associated interaction domains-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0162 [flax] [poplar] FBA PF07734 [flax] [poplar] FBA_1 F-box associated
Representative CDS sequence Show only first row Show all	>Lus10006403 pacid=23162655 polypeptide=Lus10006403 locus=Lus10006403.g ID=Lus10006403.BGIv1.0 annot-version=v1.0 ATGCCGGAATTTGACGTCATCGGATCCTGCAACGGGTTACTCTGCCTCTCCGATTCGCTTTACGGCGACGCCCTCTACGTCTACAATCCCTTCTCAGGAA AACACCTCGAGCTGCCGAAATCTTCACGTTACGCCGACCAAGAAGTGGTCTTCGGATTCGGATTCCACCCGACGACAAAACAGTACAAGGTAATCAAAAT CGTCTACTACAGAAACGCCGGATCGACCCGACCCGGCCATCCGAGGTCGCGCAGGACGGTGTTCCCGTTATCAGAAGTCCAAATTCTGACGGTGGGTTCT CCCGAATGGAGAATCCAGGGTCGAATATCTCACCAGCTTGTCCGCCGGCCGGGGGAGGCGCTTGTGAACGGGAGGATCCATTGGGTGACCAGGCCGCGGC GCTACAACCCGGTCCGGCGAGTGGTTTCGTTCGATTTGGGTGATGAGCAGTTCAGGGAAGTGCCCAAACCGAGTAGCGGTGGGTTGAGCAGGTGTAATTT CACACTGGTGGCGGTGAAGTCGTGTCTGGCGGCGGCGGTTTACTGCAACTACGGACGATTGGAGATCTGGGTGATGAAGGAGTACAATGTGAAGGAATCA TGGGTGAAGGAGTTTAGCATCGGAGCTTATATGCCGAAAGGGTTGAAGCAAAACGTCGAAAACAGATCGTACAAGATATGGCGGACCGGGTTTAATGGAC GGGTTAGGGTTCTTGGGTTCTTGAAAAATGGGGAGATTTTGTTGGAGTATAAGAGCAGAGTGTTGGTTTGTTACGACGTCAAGAATGGTAAGTTTAGGGA TTTGAAATTGCAAGGTGTGCCCAAATGGTTCCAGGCAAATGTTGTGGTGGGTTGCTTGAATTGGATCGACACTCCGCTTCACTAA
AA sequence Show only first row Show all	>Lus10006403 pacid=23162655 polypeptide=Lus10006403 locus=Lus10006403.g ID=Lus10006403.BGIv1.0 annot-version=v1.0 MPEFDVIGSCNGLLCLSDSLYGDALYVYNPFSGKHLELPKSSRYADQEVVFGFGFHPTTKQYKVIKIVYYRNAGSTRPGHPRSRRTVFPLSEVQILTVGS PEWRIQGRISHQLVRRPGEALVNGRIHWVTRPRRYNPVRRVVSFDLGDEQFREVPKPSSGGLSRCNFTLVAVKSCLAAAVYCNYGRLEIWVMKEYNVKES WVKEFSIGAYMPKGLKQNVENRSYKIWRTGFNGRVRVLGFLKNGEILLEYKSRVLVCYDVKNGKFRDLKLQGVPKWFQANVVVGCLNWIDTPLH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G07870			F-box and associated interacti...		Lus10006403 [exp]	0	1
AT1G12855			F-box family protein (.1)		Lus10042738 [exp]	1.0	0.9276
AT4G09460	MYB	ATMYB6, ATMYB8	myb domain protein 6 (.1)		Lus10009448 [exp]	1.4	0.8985
AT2G02390		GST18, ATGSTZ1	GLUTATHIONE S-TRANSFERASE 18, ...		Lus10020519 [exp]	3.0	0.8892
AT4G28240			Wound-responsive family protei...		Lus10033728 [exp]	4.5	0.8616
AT5G50380		ATEXO70F1	exocyst subunit exo70 family p...		Lus10016764 [exp]	5.3	0.8869
AT1G71340		AtGDPD4	glycerophosphodiester phosphod...		Lus10013777 [exp]	6.9	0.8538
AT5G43280		ATDCI1	"delta\(3,5\),delta\(2,4\)-die...		Lus10002583 [exp]	8.0	0.8634
AT1G34370	C2H2ZnF	STOP1	sensitive to proton rhizotoxic...		Lus10023138 [exp]	9.2	0.8787
AT3G43660			Vacuolar iron transporter (VIT...		Lus10035086 [exp]	9.4	0.8451
AT4G36470			S-adenosyl-L-methionine-depend...		Lus10041776 [exp]	9.5	0.8200

Compare expression of checked genes

Lus10006403 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.