Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G08300 80 / 3e-17 Succinyl-CoA ligase, alpha subunit (.1) AT5G23250 79 / 4e-17 Succinyl-CoA ligase, alpha subunit (.1.2) AT2G41473 47 / 4e-07 F-box family protein (.1) AT5G49610 45 / 2e-05 F-box family protein (.1) AT4G12560 45 / 2e-05 CPR1, CPR30 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) AT3G17270 44 / 2e-05 F-box family protein (.1) AT1G11620 45 / 3e-05 F-box and associated interaction domains-containing protein (.1) AT3G17280 45 / 3e-05 F-box and associated interaction domains-containing protein (.1) AT3G17480 43 / 8e-05 F-box and associated interaction domains-containing protein (.1) AT3G23880 42 / 0.0002 F-box and associated interaction domains-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017389 [exp] 105 / 8e-27 AT5G08300 588 / 0.0 Succinyl-CoA ligase, alpha subunit (.1) Lus10010187 [exp] 85 / 5e-19 AT5G08300 588 / 0.0 Succinyl-CoA ligase, alpha subunit (.1) Lus10010186 [exp] 73 / 1e-16 AT5G08300 116 / 6e-33 Succinyl-CoA ligase, alpha subunit (.1) Lus10040992 [exp] 67 / 6e-13 AT5G08300 591 / 0.0 Succinyl-CoA ligase, alpha subunit (.1) Lus10013440 [exp] 63 / 3e-11 AT5G08300 422 / 3e-148 Succinyl-CoA ligase, alpha subunit (.1) Lus10000263 [exp] 55 / 4e-09 AT2G35730 54 / 1e-09 Heavy metal transport/detoxification superfamily protein (.1) Lus10023239 [exp] 49 / 8e-07 AT3G23880 130 / 3e-34 F-box and associated interaction domains-containing protein (.1) Lus10013872 [exp] 49 / 1e-06 AT3G06240 101 / 2e-23 F-box family protein (.1) Lus10039593 [exp] 47 / 3e-06 AT4G12560 75 / 9e-16 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G036200 [exp] 72 / 2e-14 AT5G23250 496 / 6e-178 Succinyl-CoA ligase, alpha subunit (.1.2) Potri.015G028200 [exp] 69 / 1e-13 AT5G23250 507 / 0.0 Succinyl-CoA ligase, alpha subunit (.1.2) Potri.005G091400 [exp] 68 / 3e-13 AT5G23250 515 / 0.0 Succinyl-CoA ligase, alpha subunit (.1.2) Potri.001G318300 [exp] 60 / 2e-10 AT3G06240 140 / 7e-38 F-box family protein (.1) Potri.017G012200 [exp] 56 / 6e-09 AT4G12560 86 / 4e-18 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.001G318400 [exp] 56 / 8e-09 AT3G06240 142 / 3e-38 F-box family protein (.1) Potri.006G170300 [exp] 55 / 1e-08 AT4G12560 69 / 1e-12 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.012G014700 [exp] 53 / 6e-08 AT1G12170 66 / 1e-11 F-box family protein (.1) Potri.011G137200 [exp] 52 / 8e-08 AT3G07870 94 / 1e-20 F-box and associated interaction domains-containing protein (.1) Potri.017G058000 [exp] 52 / 9e-08 AT3G06240 138 / 5e-37 F-box family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0271 [flax] [poplar] F-box PF00646 [flax] [poplar] F-box F-box domain
Representative CDS sequence Show only first row Show all	>Lus10006405 pacid=23162639 polypeptide=Lus10006405 locus=Lus10006405.g ID=Lus10006405.BGIv1.0 annot-version=v1.0 ATGAATCCGGCTGTGGGTTATAAGCCGTGTTTGAGATCCACAGGGGATAAGATCGGCGATGGCCGAAGCCAGCCGTGTTTGAGTTTCACAGAGGATTGCA CAAGGCAAGACCGATCTGGCGCAGCCAGCGGTAGAGAAGGACTAGGTCCAAGCTCAGGGGAGATCGGCGGAAGGGTGGAAGGAGCGAGTTTGTTTCACGC ACCTGGATTTTCATGCGCCTACCTGCTCCGATTACGTCTTCTCGTCGTGGCCTCTTTGTCTTCCAAGCTTGGCTCTCCGACTCCCCATATCACTCCGCTC TCCTCCCAAACTTTGTCGCAATCGCGGTCCTTCACCTCCGCTCCGGCAGTGTTTGTCGACAAGAAAACACGCGTCGTTTGCCAGGGAATCACCGGCAAGA ACGGGACTTTCCACACCGAACAAGCCATTGACTACGACACCAAGATGATATCTCACAACGTCTCCCACCAACTTGACCCTCTCACTGTCAACATCGCCAT GGATGAAAAGATGAAGAAGCCATTGAACACGAATCTCTCAGAAGACATCATTGCTGACATCATGTCCTGGCTGCCAGTTAAGCCCATACTGAGGTTCAAG AGTGCTTGCAAATCATGGTACAGGCTATTCAATGAACCCCTTTTCATTCAGATGCACCTCCACCGGACGATTGCCAAGGGAAATTCCTCCCTTCTCACCT GA
AA sequence Show only first row Show all	>Lus10006405 pacid=23162639 polypeptide=Lus10006405 locus=Lus10006405.g ID=Lus10006405.BGIv1.0 annot-version=v1.0 MNPAVGYKPCLRSTGDKIGDGRSQPCLSFTEDCTRQDRSGAASGREGLGPSSGEIGGRVEGASLFHAPGFSCAYLLRLRLLVVASLSSKLGSPTPHITPL SSQTLSQSRSFTSAPAVFVDKKTRVVCQGITGKNGTFHTEQAIDYDTKMISHNVSHQLDPLTVNIAMDEKMKKPLNTNLSEDIIADIMSWLPVKPILRFK SACKSWYRLFNEPLFIQMHLHRTIAKGNSSLLT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G08300			Succinyl-CoA ligase, alpha sub...		Lus10006405 [exp]	0	1
AT4G02830			unknown protein		Lus10014664 [exp]	4.5	0.9410
AT2G36020		HVA22J	HVA22-like protein J (.1)		Lus10021299 [exp]	6.3	0.9428
AT3G22490			Seed maturation protein (.1)		Lus10022058 [exp]	15.0	0.9370
AT1G09490			NAD(P)-binding Rossmann-fold s...		Lus10026153 [exp]	16.3	0.9045
					Lus10002693 [exp]	16.6	0.9230
AT3G53400			unknown protein		Lus10019932 [exp]	16.7	0.9282
AT5G66590			CAP (Cysteine-rich secretory p...		Lus10016787 [exp]	17.2	0.9101
AT2G46600			Calcium-binding EF-hand family...		Lus10030227 [exp]	19.2	0.9244
AT3G26380			Melibiase family protein (.1)		Lus10006467 [exp]	19.4	0.9358
AT2G46600			Calcium-binding EF-hand family...		Lus10005985 [exp]	22.5	0.9238

Compare expression of checked genes

Lus10006405 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.