Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G04842 202 / 7e-63 EMB2761 EMBRYO DEFECTIVE 2761, threonyl-tRNA synthetase, putative / threonine--tRNA ligase, putative (.1) AT5G26830 77 / 4e-17 Threonyl-tRNA synthetase (.1) AT1G17960 70 / 1e-14 Threonyl-tRNA synthetase (.1) AT1G18130 63 / 3e-13 Class II aaRS and biotin synthetases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012360 [exp] 232 / 1e-73 AT2G04842 1035 / 0.0 EMBRYO DEFECTIVE 2761, threonyl-tRNA synthetase, putative / threonine--tRNA ligase, putative (.1) Lus10030645 [exp] 82 / 5e-19 AT5G26830 946 / 0.0 Threonyl-tRNA synthetase (.1) Lus10030841 [exp] 81 / 2e-18 AT5G26830 1007 / 0.0 Threonyl-tRNA synthetase (.1) Lus10005351 [exp] 77 / 4e-17 AT5G26830 1088 / 0.0 Threonyl-tRNA synthetase (.1) Lus10021402 [exp] 77 / 5e-17 AT5G26830 1093 / 0.0 Threonyl-tRNA synthetase (.1) Lus10030843 [exp] 51 / 4e-08 AT5G26830 248 / 2e-77 Threonyl-tRNA synthetase (.1) Lus10030644 [exp] 48 / 8e-08 AT1G17960 150 / 3e-44 Threonyl-tRNA synthetase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G162200 [exp] 218 / 2e-68 AT2G04842 1089 / 0.0 EMBRYO DEFECTIVE 2761, threonyl-tRNA synthetase, putative / threonine--tRNA ligase, putative (.1) Potri.008G145600 [exp] 78 / 1e-17 AT5G26830 1100 / 0.0 Threonyl-tRNA synthetase (.1) Potri.010G096500 [exp] 76 / 9e-17 AT5G26830 827 / 0.0 Threonyl-tRNA synthetase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0458 [flax] [poplar] IIaaRS-ABD PF03129 [flax] [poplar] HGTP_anticodon Anticodon binding domain
Representative CDS sequence Show only first row Show all	>Lus10006406 pacid=23162664 polypeptide=Lus10006406 locus=Lus10006406.g ID=Lus10006406.BGIv1.0 annot-version=v1.0 ATGATCCACAGAGCGGTACTTGGATCTTTAGAACGGTTTTTCGGAGTCCTCATAGAGCATTATGCTGGGGACTTAGATCATTATGCCGGGGACTTCCCGC TGTGGCTTGCCCCGGTACAAGTACGAATACTGCCAGTAACCGATACACAGCTTGACTACTGCCGCAAAATCGCCAGCGAACTGAAGCAGCATGGCATTCG AGCTGAACTCTGCCATGGGGAAAGGCTGCCTAAGCTTATAAGGAATGCAGAGAAGCAGAAAACTCCCCTGATGGCGGTGGTTGGTCCTAAGGAAGTTGAG ACGCAAACAGTCACAGTTAGATCTAGGTTTGCTGGGGAACTGGGGACCTTGGAAATTGACGATTTTATCGGCAAAATCAAGAATGTCTGTGATAATAGAA GTTCACTGTGA
AA sequence Show only first row Show all	>Lus10006406 pacid=23162664 polypeptide=Lus10006406 locus=Lus10006406.g ID=Lus10006406.BGIv1.0 annot-version=v1.0 MIHRAVLGSLERFFGVLIEHYAGDLDHYAGDFPLWLAPVQVRILPVTDTQLDYCRKIASELKQHGIRAELCHGERLPKLIRNAEKQKTPLMAVVGPKEVE TQTVTVRSRFAGELGTLEIDDFIGKIKNVCDNRSSL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G04842		EMB2761	EMBRYO DEFECTIVE 2761, threony...		Lus10006406 [exp]	0	1
AT4G24090			unknown protein		Lus10017325 [exp]	2.4	0.8800
AT1G74410			RING/U-box superfamily protein...		Lus10021628 [exp]	3.2	0.8884
AT2G38570			unknown protein		Lus10014180 [exp]	5.6	0.8921
AT1G69550			disease resistance protein (TI...		Lus10005807 [exp]	6.9	0.8080
AT2G22360			DNAJ heat shock family protein...		Lus10025742 [exp]	7.7	0.8381
AT4G33490			Eukaryotic aspartyl protease f...		Lus10020874 [exp]	7.7	0.8187
AT5G38510			Rhomboid-related intramembrane...		Lus10000628 [exp]	11.5	0.8646
AT5G50920		CLPC1, CLPC, AT...	HEAT SHOCK PROTEIN 93-V, DE-RE...		Lus10043196 [exp]	15.2	0.8168
					Lus10033476 [exp]	16.2	0.8488
AT5G19940			Plastid-lipid associated prote...		Lus10042448 [exp]	16.4	0.8612

Compare expression of checked genes

Lus10006406 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.