Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G35700 827 / 0 FIM2, FIM5 FIMBRIN5, fimbrin-like protein 2 (.1) AT2G04750 769 / 0 Actin binding Calponin homology (CH) domain-containing protein (.1) AT5G48460 639 / 0 Actin binding Calponin homology (CH) domain-containing protein (.1) AT4G26700 420 / 1e-140 ATFIM1 ARABIDOPSIS THALIANA FIMBRIN 1, fimbrin 1 (.1.2.3) AT5G55400 404 / 2e-132 Actin binding Calponin homology (CH) domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012361 [exp] 1003 / 0 AT5G35700 843 / 0.0 FIMBRIN5, fimbrin-like protein 2 (.1) Lus10038235 [exp] 709 / 0 AT5G48460 1068 / 0.0 Actin binding Calponin homology (CH) domain-containing protein (.1) Lus10025865 [exp] 612 / 0 AT5G48460 1013 / 0.0 Actin binding Calponin homology (CH) domain-containing protein (.1) Lus10016580 [exp] 413 / 2e-136 AT4G26700 986 / 0.0 ARABIDOPSIS THALIANA FIMBRIN 1, fimbrin 1 (.1.2.3) Lus10014894 [exp] 402 / 2e-132 AT4G26700 946 / 0.0 ARABIDOPSIS THALIANA FIMBRIN 1, fimbrin 1 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G086500 [exp] 809 / 0 AT4G26700 1025 / 0.0 ARABIDOPSIS THALIANA FIMBRIN 1, fimbrin 1 (.1.2.3) Potri.014G163100 [exp] 787 / 0 AT5G35700 1028 / 0.0 FIMBRIN5, fimbrin-like protein 2 (.1) Potri.001G360100 [exp] 740 / 0 AT4G26700 1019 / 0.0 ARABIDOPSIS THALIANA FIMBRIN 1, fimbrin 1 (.1.2.3) Potri.002G251600 [exp] 678 / 0 AT5G48460 1108 / 0.0 Actin binding Calponin homology (CH) domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0188 [flax] [poplar] CH PF00307 [flax] [poplar] CH Calponin homology (CH) domain
Representative CDS sequence Show only first row Show all	>Lus10006407 pacid=23162662 polypeptide=Lus10006407 locus=Lus10006407.g ID=Lus10006407.BGIv1.0 annot-version=v1.0 ATGTCCGGTTATGGTGTACTTGTATCTGATCCATGGCTTCAGAGCCAATTCACCCAAGTCCAGCTGCGGACCCTCAAATCCAAGTATGATTCGGTTAAGA ACGCGGTGGGTCGGGTCACGGTGGGGGATATGCCTATTGTATTCTCAAAGTTGAAGGCTTTCATTGATGTTTTCTCCGAGAATGATATCAGTGCTATGCT TCAAGAGTCGACTTCTAATATGGATGAGGAGATTGATTTTGAATCCTTCCTTAGGGCCTACCTAAATTTACATGGACGAGCATCCATCAAATCGAAATCA GCAGGGAAGAAACTGGCAGGTTCCACTTCTTTCCTCAAGGCATCCACAACCACTTTCCACCACAACGTTAACGAATCTGAGAAGAATTCGTATGTGCAAC ATATTAACAAGCACTTGGCAGAAGACAAGTTCCTCAAGGACTATCTACCCATCGATCCCAACACCAATGCCTTGTTCGATCTGATCAAGAACGGAGTCCT CCTTTGTAAGCTAATCAATGTGGCTGTTCCTAACACCATAGATGAGCGTGCTATTAACACCAAAAAGGCCCTTAATCCATGGGAGAGAAACGAGAATCAT AACCTTTGCCTTAACTCTGCTAAGGCTATTGGATGTACTGTTGTCAATATTGGCACTCAGGATCTTGTTGAAGCTAGACCTCATCTAGTGCTTGGATTGA TATCCCAGATTGTTAAGATTCAACTGCTCGCTGATGTGAATATTAAGAGTACGCCTGAACTACTTGAGTTGGTTGATGACAATGAGGAAGCGGAAGAGCT CATGAACTTAGCACCAGAGAAGGTTCTGTTGAAATGGATGAATTTCCATTTGAAAAAGGCTGGATATTCAAAGCAAGTTACAAACTTTTCTTCTGATGTC AAGGATGGAGAGGCATATGCTTACCTCCTTACCGCTCTAGCACCAGAACTCACAAATACCTCACTCCCACCGCCATTGTCGGAGATGATGGAGGACGATG ATCAAACTTCTAGGGAAGAGAGATGCTTCCGGCTTTGGATTAACAGTCTCGGAATACCTACTTACTGCAACAATGTTTTTGACGATGTCAGGAATGGATG GATTCTGTTAGAAGTTCTGGACAAAGTTTCGTCGGGATCAGTTAACTGGAAGCTGGCAACCAAGCCTCCCATTAAGATGCCATTCAGAAAGGTCGAGAAT TGTAATCAGGTCATTCAGATAGGGAAGGATTTGCATTTCTCCCTTGTGAATGTAGCTGGGAATGACATTGTCCAAGGAAACAAGAAGCTTATAATAGCAT ATTTATGGCAACTAGTGAGGTTCAGCATGCTTCAACTCCTGAGAAACTTGAGGGCTCACTCCTCCGAAGGTAAAGAGATAACGGATGCAGACATTCTGAA CTGGGCGAACGACAAAGTGAAGAAGGCAGGGAAAACATCTCAAATGGATAGCTTCAAGGATAAGAACCTTGCTACTGGGGTTTTCTTCCTGGAGCTTCTC AGTGCAGTGGAGCCAAGGGTGGTCAACTGGGAAGTCTGCACAGATGGAGGAACTGATGAGGATAAAAAGTTGAATGCAACCTACATCATCAGTGTTGCCA GGAAGCTTGGATGTTCCATCTTCTTGTTACCTGAGGACATCATGGAGGTGAACCAGAAGATGATCCTGATATTGCCAGCCAGCATTATGTACTGGAGCCT GCAGCGTAAGGGTGGACATACCTACAATGCTCCTCCTGCCTCTGTGGCATCCGAGGAGCATGATGAAGAAGCTGACGCTGCTGCTGAAGAGCCCTCTGAA TAG
AA sequence Show only first row Show all	>Lus10006407 pacid=23162662 polypeptide=Lus10006407 locus=Lus10006407.g ID=Lus10006407.BGIv1.0 annot-version=v1.0 MSGYGVLVSDPWLQSQFTQVQLRTLKSKYDSVKNAVGRVTVGDMPIVFSKLKAFIDVFSENDISAMLQESTSNMDEEIDFESFLRAYLNLHGRASIKSKS AGKKLAGSTSFLKASTTTFHHNVNESEKNSYVQHINKHLAEDKFLKDYLPIDPNTNALFDLIKNGVLLCKLINVAVPNTIDERAINTKKALNPWERNENH NLCLNSAKAIGCTVVNIGTQDLVEARPHLVLGLISQIVKIQLLADVNIKSTPELLELVDDNEEAEELMNLAPEKVLLKWMNFHLKKAGYSKQVTNFSSDV KDGEAYAYLLTALAPELTNTSLPPPLSEMMEDDDQTSREERCFRLWINSLGIPTYCNNVFDDVRNGWILLEVLDKVSSGSVNWKLATKPPIKMPFRKVEN CNQVIQIGKDLHFSLVNVAGNDIVQGNKKLIIAYLWQLVRFSMLQLLRNLRAHSSEGKEITDADILNWANDKVKKAGKTSQMDSFKDKNLATGVFFLELL SAVEPRVVNWEVCTDGGTDEDKKLNATYIISVARKLGCSIFLLPEDIMEVNQKMILILPASIMYWSLQRKGGHTYNAPPASVASEEHDEEADAAAEEPSE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G35700		FIM2, FIM5	FIMBRIN5, fimbrin-like protein...		Lus10006407 [exp]	0	1
AT5G07720			Galactosyl transferase GMA12/M...		Lus10019076 [exp]	3.2	0.8644
AT5G35700		FIM2, FIM5	FIMBRIN5, fimbrin-like protein...		Lus10012361 [exp]	6.2	0.9136
AT1G51160			SNARE-like superfamily protein...		Lus10039298 [exp]	9.9	0.8512
AT5G51480		SKS2	SKU5 similar 2 (.1)		Lus10027207 [exp]	12.2	0.8138
AT2G23093			Major facilitator superfamily ...		Lus10014854 [exp]	12.9	0.7858
AT3G47570			Leucine-rich repeat protein ki...		Lus10033363 [exp]	18.1	0.7798
AT1G16890		UBC36 ,UBC13B	UBIQUITIN CONJUGATING ENZYME 1...		Lus10000615 [exp]	25.4	0.8201
AT3G25600			Calcium-binding EF-hand family...		Lus10017900 [exp]	33.4	0.8434
AT2G01190		PDE331	PIGMENT DEFECTIVE 331, Octicos...		Lus10034643 [exp]	40.0	0.8383
AT2G32170			S-adenosyl-L-methionine-depend...		Lus10031038 [exp]	40.0	0.8364

Compare expression of checked genes

Lus10006407 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.