Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G04740 471 / 1e-163 ankyrin repeat family protein (.1) AT5G19330 51 / 8e-07 ARIA ARM repeat protein interacting with ABF2 (.1.2) AT3G43700 45 / 9e-05 ATBPM6 BTB-POZ and MATH domain 6 (.1) AT2G39760 44 / 0.0002 ATBPM3 BTB/POZ/MATH-domains containing protein (.1.2) AT3G06190 43 / 0.0003 ATBPM2 BTB-POZ and MATH domain 2 (.1.2) AT2G30600 43 / 0.0003 BTB/POZ domain-containing protein (.1.2.3.4.5)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012362 [exp] 618 / 0 AT2G04740 831 / 0.0 ankyrin repeat family protein (.1) Lus10034070 [exp] 50 / 2e-06 AT5G19330 1092 / 0.0 ARM repeat protein interacting with ABF2 (.1.2) Lus10010527 [exp] 50 / 4e-06 AT5G19330 1103 / 0.0 ARM repeat protein interacting with ABF2 (.1.2) Lus10041235 [exp] 47 / 1e-05 AT3G06190 339 / 8e-117 BTB-POZ and MATH domain 2 (.1.2) Lus10021946 [exp] 47 / 2e-05 AT3G06190 620 / 0.0 BTB-POZ and MATH domain 2 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G163200 [exp] 509 / 1e-178 AT2G04740 827 / 0.0 ankyrin repeat family protein (.1) Potri.002G052700 [exp] 51 / 9e-07 AT5G19330 994 / 0.0 ARM repeat protein interacting with ABF2 (.1.2) Potri.010G029500 [exp] 50 / 1e-06 AT3G06190 580 / 0.0 BTB-POZ and MATH domain 2 (.1.2) Potri.005G210000 [exp] 50 / 3e-06 AT5G19330 977 / 0.0 ARM repeat protein interacting with ABF2 (.1.2) Potri.008G200700 [exp] 45 / 7e-05 AT3G06190 582 / 0.0 BTB-POZ and MATH domain 2 (.1.2) Potri.008G150100 [exp] 45 / 0.0001 AT5G19330 1045 / 0.0 ARM repeat protein interacting with ABF2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0033 [flax] [poplar] POZ PF00651 [flax] [poplar] BTB BTB/POZ domain
Representative CDS sequence Show only first row Show all	>Lus10006408 pacid=23162646 polypeptide=Lus10006408 locus=Lus10006408.g ID=Lus10006408.BGIv1.0 annot-version=v1.0 ATGAACACTCAAGCTTTCAGCACCTATCTTCTTCTTCCTTCATTCTCTCTCGTTTCTCTCCATCGACCCCTCTCGTCCATTTCTCACAGCAGCTCCCAAG TTCCAGGTGTTTCATTTGGTGGTGTACCGAATTCCAACTACTTCCCTCCTGATGTGGATCGAAAGGAAGTAAGGTTTGCAAAGGAAAAGCTGTCCTATCC CGCACTCTTCTGCCTCCTTCACTTCTTCTATTCCGACAGACTAGAAGTTGCAGTCGACGATATGGAAGGTCTTGTAAGAATCTGCAAAGTGTGCAAATGC GAGTCGTTACAACAAATTCTCGAAAACGAACTACTTCACCAGAAGTTTGCAGAGTACAAGGCCCCGAAAGACGTGGACAACACTCAGAAGCGATTTATCC TACAGGGAGTGTCGCTGCCTGAGGAAGACCGGCTTCCAGCTGCATTATATCGAATCCTTAAGACTTCTCTGAGAAGGTCCACTTTGGACCATACCCCTGA TAATAGTATCGTTGATGAGCTGGTTCGTTCTTTTGGAGCGGTGCAGACAAGTGATTGCGTAGATGATCTTGCTGATTTTTGTATTAGGGTGGAGAAGAAG GTTTTCCGATGTCATCAAGTGGTTTTAGCAGCAAGGTCTGAGTATTTTAGAGCTCGATTGTCCCGTATGAAGGACTTTAATGAAGGGAAGAACGGGTTTC GTGAGGATGTTCTTCCGTGCATTGAAGAACATGACTTGAGCATGGAGGCATTCGAGAAGATGCTCGAGTATATGTACACTGATGCTTTAACAGATATCGA TCCAGATCAGGTGGAGAAAATGTTTGATGCTGCTTCGAGGTATCTGTTATTTCCTCTGAAGCGCGCCGTTGCTGATGTATTGTTGCCGCATCTCGAAAAT GCCTCACCGGTAGAGCTTTGCCTTTGGTTGATATTGTCGGACATGTACGGCGTGCTGAAGATCCGCGAGTACTGTCTCGACGCAATAGCTTGTGATTTTG AGACATTTGCCGAAACTCGAGATGTTGACACAGACCAGGCGAATCTTCTCGATGATCTGAGAGAGAGGTGGCTTGAAGCTGCAGAGCTTGATAAGCGAGA CGAGAGTGCACTCATCTTCGACAAACGCCTTGAGATGCTTATTCTTGTGGCGGAGAATGAGAAATCTGATCAACTGACCGATGGAGGAATGCACGATCGT TAG
AA sequence Show only first row Show all	>Lus10006408 pacid=23162646 polypeptide=Lus10006408 locus=Lus10006408.g ID=Lus10006408.BGIv1.0 annot-version=v1.0 MNTQAFSTYLLLPSFSLVSLHRPLSSISHSSSQVPGVSFGGVPNSNYFPPDVDRKEVRFAKEKLSYPALFCLLHFFYSDRLEVAVDDMEGLVRICKVCKC ESLQQILENELLHQKFAEYKAPKDVDNTQKRFILQGVSLPEEDRLPAALYRILKTSLRRSTLDHTPDNSIVDELVRSFGAVQTSDCVDDLADFCIRVEKK VFRCHQVVLAARSEYFRARLSRMKDFNEGKNGFREDVLPCIEEHDLSMEAFEKMLEYMYTDALTDIDPDQVEKMFDAASRYLLFPLKRAVADVLLPHLEN ASPVELCLWLILSDMYGVLKIREYCLDAIACDFETFAETRDVDTDQANLLDDLRERWLEAAELDKRDESALIFDKRLEMLILVAENEKSDQLTDGGMHDR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G04740			ankyrin repeat family protein ...		Lus10006408 [exp]	0	1
AT5G51920			Pyridoxal phosphate (PLP)-depe...		Lus10006342 [exp]	1.4	0.8712
AT4G19170		CCD4, NCED4	carotenoid cleavage dioxygenas...		Lus10037286 [exp]	1.4	0.8884
AT4G08250	GRAS		GRAS family transcription fact...		Lus10022664 [exp]	1.7	0.8344
AT4G25440	C3HZnF	ZFWD1	zinc finger WD40 repeat protei...		Lus10032062 [exp]	4.7	0.7866
AT3G02100			UDP-Glycosyltransferase superf...		Lus10015749 [exp]	6.3	0.8234
AT1G61550			S-locus lectin protein kinase ...		Lus10037730 [exp]	10.4	0.8015
AT3G11620		BAS1	alpha/beta-Hydrolases superfam...		Lus10004214 [exp]	11.6	0.7941
AT1G33970			P-loop containing nucleoside t...		Lus10003732 [exp]	13.4	0.7873
AT2G20900		DGK5, ATDGK5	diacylglycerol kinase 5 (.1.2....		Lus10018527 [exp]	13.5	0.8014
AT1G74670		GASA6	GA-stimulated Arabidopsis 6, G...		Lus10002059 [exp]	17.7	0.8106

Compare expression of checked genes

Lus10006408 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.