Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G04740 114 / 3e-30 ankyrin repeat family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012362 [exp] 171 / 3e-51 AT2G04740 831 / 0.0 ankyrin repeat family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G163200 [exp] 137 / 2e-38 AT2G04740 827 / 0.0 ankyrin repeat family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10006409 pacid=23162660 polypeptide=Lus10006409 locus=Lus10006409.g ID=Lus10006409.BGIv1.0 annot-version=v1.0 ATGCCTCCGCATACCATGGACCCAATCGACCTCGACGCTTCCGATTTCAACTCATCCCTTCGCCTCAAGAAGGTCCCCAACGGCGACGTCTTCGAAGCCT CCCGTGCCGGCGACGTCGACCGCCTCCGCTACCACTTAGAATCCGGCGTCAACGTCAACGCCCGGGACCAATGGGATTCCGTCGCCTTGTGCCACTATGC CGCCTTGAATTTGAAAGTCAGGAAGCTTTTGAAAGCATTCGAAGCTCGTCCGCCTCCTTTAGGTCCTCTGCCCGCCGCCTTGAGTGATGTTTTCTTGAGT TGCGCCGCCAATAGGGCGTATTTGCAGCTTGTTGAAGGCACCAACTTGTGGGAGGCTATCAGAAGAGGAGAAGAACAGCAGGAGCTGCACATTATCCAGA GAAGGAAATGCATTACCGTTGGAAGAAGATGA
AA sequence Show only first row Show all	>Lus10006409 pacid=23162660 polypeptide=Lus10006409 locus=Lus10006409.g ID=Lus10006409.BGIv1.0 annot-version=v1.0 MPPHTMDPIDLDASDFNSSLRLKKVPNGDVFEASRAGDVDRLRYHLESGVNVNARDQWDSVALCHYAALNLKVRKLLKAFEARPPPLGPLPAALSDVFLS CAANRAYLQLVEGTNLWEAIRRGEEQQELHIIQRRKCITVGRR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G04740			ankyrin repeat family protein ...		Lus10006409 [exp]	0	1
AT3G21460			Glutaredoxin family protein (....		Lus10012815 [exp]	15.1	0.7139
AT3G13790		ATCWINV1, ATBFR...	ARABIDOPSIS THALIANA CELL WALL...		Lus10015613 [exp]	15.5	0.6945
AT5G03680	Trihelix	PTL	PETAL LOSS, Duplicated homeodo...		Lus10027718 [exp]	17.4	0.7125
AT2G40080		ELF4	EARLY FLOWERING 4, Protein of ...		Lus10028288 [exp]	44.8	0.6332
AT5G12180		CPK17	calcium-dependent protein kina...		Lus10023346 [exp]	51.5	0.6316
AT5G66350		SHI	SHORT INTERNODES, Lateral root...		Lus10028794 [exp]	65.7	0.5648
AT5G28210			mRNA capping enzyme family pro...		Lus10040496 [exp]	79.1	0.5897
AT3G03450	GRAS	RGL2	RGA-like 2 (.1)		Lus10016893 [exp]	83.2	0.5948
AT1G05370			Sec14p-like phosphatidylinosit...		Lus10021919 [exp]	110.8	0.5710
AT3G18990	B3	REM39, VRN1	REDUCED VERNALIZATION RESPONSE...		Lus10019652 [exp]	113.3	0.5898

Compare expression of checked genes

Lus10006409 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.