Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G07890 679 / 0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) AT2G37290 182 / 1e-50 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) AT2G39280 177 / 4e-49 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) AT3G55020 177 / 5e-49 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) AT5G15930 145 / 9e-40 PAM1 plant adhesion molecule 1 (.1) AT3G02460 139 / 1e-37 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) AT5G52580 69 / 2e-12 RabGAP/TBC domain-containing protein (.1.2) AT2G30710 65 / 4e-11 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) AT4G27100 61 / 7e-10 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) AT4G28550 61 / 7e-10 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012363 [exp] 775 / 0 AT3G07890 698 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) Lus10014020 [exp] 186 / 9e-52 AT2G37290 801 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) Lus10041425 [exp] 174 / 6e-48 AT3G55020 919 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Lus10040349 [exp] 171 / 8e-47 AT3G55020 895 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Lus10023472 [exp] 166 / 6e-45 AT3G55020 865 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Lus10003047 [exp] 142 / 1e-38 AT3G02460 577 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) Lus10034099 [exp] 140 / 6e-38 AT3G02460 573 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) Lus10036500 [exp] 91 / 1e-19 AT3G55020 608 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Lus10008148 [exp] 76 / 9e-15 AT2G30710 625 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G163400 [exp] 696 / 0 AT3G07890 719 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) Potri.002G218100 [exp] 689 / 0 AT3G07890 696 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) Potri.006G133400 [exp] 187 / 2e-52 AT2G37290 875 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) Potri.010G215000 [exp] 172 / 2e-47 AT3G55020 1039 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Potri.008G046600 [exp] 171 / 6e-47 AT3G55020 965 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Potri.004G106700 [exp] 147 / 8e-41 AT5G15930 584 / 0.0 plant adhesion molecule 1 (.1) Potri.017G109000 [exp] 141 / 2e-38 AT5G15930 575 / 0.0 plant adhesion molecule 1 (.1) Potri.007G134200 [exp] 75 / 1e-14 AT2G30710 692 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Potri.006G066300 [exp] 69 / 3e-12 AT5G52580 925 / 0.0 RabGAP/TBC domain-containing protein (.1.2) Potri.018G127500 [exp] 66 / 2e-11 AT5G52580 917 / 0.0 RabGAP/TBC domain-containing protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00566 [flax] [poplar] RabGAP-TBC Rab-GTPase-TBC domain
Representative CDS sequence Show only first row Show all	>Lus10006410 pacid=23162637 polypeptide=Lus10006410 locus=Lus10006410.g ID=Lus10006410.BGIv1.0 annot-version=v1.0 ATGTACCAGAAAAGGGAGCTTCCTCTAGATTTTCAGCAGCACGTCCCGATTCTGAGGCCGAGCATCCATTCAAGGAGGGCTAATATAATAGTCAAATTCC AGGACCTGTACGGATTCACTGTTGAGGGGAATGTTGATGATGCGAACGTGATGAATGAAGTGAGGGAGAAGGTGAGGGAGCAAGGGAGAGTTTGGTGGGC ATTGGAGGCTAGCAAAGGTGCTAATTGGTACTTGCAGCCGCAGGCTTTGTCACTTGCCTTGAAGTCCTCCCTCAAATTGTCTGCGATTACTAACTCCATA GCACTCAAGAGGCTTATCAGGAAGGGGATACCTCCTGTCCTTAGGCCTAAGGTTTGGTTCTCCCTCTCTGGAGCGGCTAAGAAGAAATCCACTGTTCCTG ATAGCTATTACAATGATTTGATCGTGGCTGTTGAAGGGAAGGTCACTCCAGCTACCAGGCAGATTGATCATGACTTGCCCCGCACCTTTCCTGGTCATCC ATGGTTGGACACTCCAGAAGGTCATGCTGCTCTTCGTCGTGTTCTTGTTGCGTATTCCTTCCGCGATTCAGATGTTGGCTATTGCCAGGGTTTAAACTAC GTTGCTGCATTGTTATTGCTTGTAATGAAAACTGAGGAAGATGCATTTTGGATGCTAGCCGTCCTCCTGGAGAATGTATTGGTTAATGACTGCTACACAA CTAATTTGTCAGGGTGTCATGTTGAACAAAGAGTTTTCAAGGATTTGCTGGATAAACAGTGTCCAAGGCTAGCAGCTCATTTGGATTCGTTGGAGTTTGA CGTCTCCCTTGTAGCCACAGAATGGTTCTTATGCCTATTCTCTAAGAGCTTACCGTCAGAGACAACGTTACGAGTATGGGATGTCCTGTTCTATGAGGGA GCTAAAGTTCTCTTTCATGTCGCTTTGGCCATGTTCAAGATGAAGGAAGAGCAGCTGCTCCTTACACACCATGTTGGTGATGTGATCAACATATTGCAGA AAACCACACACCACCTCTTCGATCCAGATGATTTACTCACAGTGGCATTTGACAAAATAGGCTCGATGACTACTAACACGATATCGAAGCAAAGGAAGAA GCAAGAACCAGCAGTAATGGCAGAACTTGATGAGCGACTGAGGAGACTAAACACTGTTAGACTGGGTGATAAATAG
AA sequence Show only first row Show all	>Lus10006410 pacid=23162637 polypeptide=Lus10006410 locus=Lus10006410.g ID=Lus10006410.BGIv1.0 annot-version=v1.0 MYQKRELPLDFQQHVPILRPSIHSRRANIIVKFQDLYGFTVEGNVDDANVMNEVREKVREQGRVWWALEASKGANWYLQPQALSLALKSSLKLSAITNSI ALKRLIRKGIPPVLRPKVWFSLSGAAKKKSTVPDSYYNDLIVAVEGKVTPATRQIDHDLPRTFPGHPWLDTPEGHAALRRVLVAYSFRDSDVGYCQGLNY VAALLLLVMKTEEDAFWMLAVLLENVLVNDCYTTNLSGCHVEQRVFKDLLDKQCPRLAAHLDSLEFDVSLVATEWFLCLFSKSLPSETTLRVWDVLFYEG AKVLFHVALAMFKMKEEQLLLTHHVGDVINILQKTTHHLFDPDDLLTVAFDKIGSMTTNTISKQRKKQEPAVMAELDERLRRLNTVRLGDK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G07890			Ypt/Rab-GAP domain of gyp1p su...		Lus10006410 [exp]	0	1
AT5G27600		LACS7, ATLACS7	long-chain acyl-CoA synthetase...		Lus10002454 [exp]	1.0	0.8857
AT5G19420			Regulator of chromosome conden...		Lus10036030 [exp]	2.4	0.8720
AT3G19340			Protein of unknown function (D...		Lus10041512 [exp]	3.0	0.8427
AT1G20080		SYT2, NTMCTYPE1...	synaptotagmin 2, Calcium-depen...		Lus10017268 [exp]	5.5	0.8132
AT5G41120			Esterase/lipase/thioesterase f...		Lus10012560 [exp]	5.7	0.8344
AT3G61050		AtCLB, NTMCTYPE...	calcium-dependent lipid-bindin...		Lus10041396 [exp]	6.7	0.8334
AT4G26100		CKL1, CK1	casein kinase 1 (.1)		Lus10011940 [exp]	7.3	0.8333
AT1G20080		SYT2, NTMCTYPE1...	synaptotagmin 2, Calcium-depen...		Lus10013563 [exp]	9.9	0.7995
AT5G39360		EDL2	EID1-like 2 (.1)		Lus10042699 [exp]	10.0	0.7848
AT1G55535			unknown protein		Lus10010333 [exp]	10.2	0.8201

Compare expression of checked genes

Lus10006410 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.