Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G43270 174 / 4e-50 SBP SPL2 squamosa promoter binding protein-like 2 (.1.2.3) AT1G27370 161 / 1e-45 SBP SPL10 squamosa promoter binding protein-like 10 (.1.2.3.4) AT1G27360 157 / 6e-44 SBP SPL11 squamosa promoter-like 11 (.1.2.3.4) AT2G42200 124 / 4e-32 SBP SPL9, AtSPL9 squamosa promoter binding protein-like 9 (.1) AT1G02065 123 / 5e-32 SBP SPL8 squamosa promoter binding protein-like 8 (.1.2) AT1G69170 123 / 2e-31 SBP SPL6 Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.1) AT3G57920 122 / 2e-31 SBP SPL15, MSC1 squamosa promoter binding protein-like 15 (.1) AT2G47070 119 / 6e-29 SBP SPL1 squamosa promoter binding protein-like 1 (.1) AT2G33810 108 / 1e-28 SBP SPL3 squamosa promoter binding protein-like 3 (.1) AT3G60030 117 / 2e-28 SBP SPL12 squamosa promoter-binding protein-like 12 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011356 [exp] 609 / 0 AT5G43270 211 / 4e-64 squamosa promoter binding protein-like 2 (.1.2.3) Lus10021614 [exp] 161 / 2e-45 AT5G43270 192 / 9e-57 squamosa promoter binding protein-like 2 (.1.2.3) Lus10021034 [exp] 135 / 6e-36 AT2G42200 199 / 2e-60 squamosa promoter binding protein-like 9 (.1) Lus10023818 [exp] 130 / 6e-34 AT2G42200 191 / 3e-57 squamosa promoter binding protein-like 9 (.1) Lus10003126 [exp] 121 / 2e-31 AT5G50670 161 / 5e-47 SQUAMOSA PROMOTER-BINDING PROTEIN LIKE 13B, SQUAMOSA PROMOTER-BINDING PROTEIN LIKE 13, Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.1) Lus10016275 [exp] 121 / 3e-31 AT2G42200 179 / 1e-53 squamosa promoter binding protein-like 9 (.1) Lus10028181 [exp] 120 / 1e-30 AT1G02065 224 / 4e-71 squamosa promoter binding protein-like 8 (.1.2) Lus10011348 [exp] 119 / 1e-30 AT5G50670 164 / 3e-48 SQUAMOSA PROMOTER-BINDING PROTEIN LIKE 13B, SQUAMOSA PROMOTER-BINDING PROTEIN LIKE 13, Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.1) Lus10021141 [exp] 121 / 4e-30 AT1G69170 168 / 9e-47 Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G172600 [exp] 236 / 2e-73 AT5G43270 237 / 3e-73 squamosa promoter binding protein-like 2 (.1.2.3) Potri.001G055900 [exp] 220 / 2e-67 AT5G43270 233 / 3e-72 squamosa promoter binding protein-like 2 (.1.2.3) Potri.018G149900 [exp] 176 / 2e-50 AT5G43270 187 / 1e-54 squamosa promoter binding protein-like 2 (.1.2.3) Potri.008G097900 [exp] 132 / 6e-34 AT1G69170 169 / 2e-47 Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.1) Potri.016G048500 [exp] 128 / 2e-33 AT2G42200 217 / 3e-67 squamosa promoter binding protein-like 9 (.1) Potri.001G058600 [exp] 125 / 3e-32 AT5G50570 164 / 3e-47 SQUAMOSA PROMOTER-BINDING PROTEIN LIKE 13, Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.1), Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.2) Potri.002G142200 [exp] 123 / 5e-32 AT1G02065 243 / 8e-79 squamosa promoter binding protein-like 8 (.1.2) Potri.012G100700 [exp] 123 / 8e-32 AT5G50570 222 / 6e-70 SQUAMOSA PROMOTER-BINDING PROTEIN LIKE 13, Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.1), Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.2) Potri.003G169400 [exp] 122 / 1e-31 AT5G50570 163 / 2e-47 SQUAMOSA PROMOTER-BINDING PROTEIN LIKE 13, Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.1), Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.2) Potri.001G398200 [exp] 119 / 1e-31 AT1G53160 162 / 6e-51 squamosa promoter binding protein-like 4 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03110 [flax] [poplar] SBP SBP domain
Representative CDS sequence Show only first row Show all	>Lus10006411 pacid=23171992 polypeptide=Lus10006411 locus=Lus10006411.g ID=Lus10006411.BGIv1.0 annot-version=v1.0 ATGGAGTGGAATCCGAAGCCAAACTTGCAATGGGACTGGGAGAATCTGATAATGTACAATGACAACAATAACCCCAGAAAGCTAGACGATGATGAAGAAG AAGAAGGAGCAGATTGGGAAATTGCGGAGGAAAAAGGAACCCCAGTAATCCATGCTGGTTCGTTCTCATCAAAGCCATCTTCCACCACTTCATCACAAAC ACAAACACCACCGAAAACGACGGGGTATTCCACCGAGCCTTTGCTTGGTTTGAAGCTCGGGAAGAGGACCTACTTCGAGGACTCGAGTTGCGTGAGCAAC TCTAGTAAGGTGGCATCAGGAGCATCGGTCCCGGTGAATGCTGCTGCTAGTACGATGATGAAACGTTCGAGGTCGAGTTCGAGTGGAGTTCCGGTTTATT GCCAGGTGGAAGGGTGTAACCTCGATCTTTCGGGGGTGAAGGATTACCATCGGAAGCATCGAGTTTGCGAGAGCCATTCGAAGTGCCCCAAGGTTGTTGT TGCCGGACTCGAACGTAGGTTCTGCCAACAATGTAGCAGGTTCCACAGCCTGTTCGAGTTCGACGAGAAGAAGAGAAGCTGTCGGAAGAGGCTCTCGGAT CACAATGCAAGGCGTCGCAAGCCACAGGGCGAGTCGCTTCGCTTCAGCCCTTCAAGGTTGCATTCATCTATATACGATGAGAGGCAAAGAATGAGCTACG GGTGGGACACCAGGAGTCCGCTCGTCCACGGAAGGCCCGGAAACTATCTGTTCTGGGATGACTCATCGGGGTCCAAGTTCACAATAACAAAGGAGTGTCC TTCTGATATCCCGACTCATCATCATCATCATCTCCTTGGAAGCCAGCCGGCTTCCACTCAAGGAGTGGAGGTGGTAGAATCAACCGTGTCATTGAACCCG GGTGGTGATGATGCTACCCAGGATCTGCAACGTGCTCTCTCTCTTCTGTCAACGAATTCCTCATCGTGGGGCTCATGCGAGCAGCCATCGACGATAACTT CACTCGATACCGTTCACACAACCTCTGCCGGGTTTCCTCAGCCTTTGTCCGGAATGCCACTGCAGTCGGTTGACGCTCAGATGCGTTCCTTCACACCATC ACAGGCTGACAACTCTCAGCATCATCAGCAGGTGCTGAAAGGGCCACAGTATTCGGCCGAGTTTTACCATTGCCAGTTGTAG
AA sequence Show only first row Show all	>Lus10006411 pacid=23171992 polypeptide=Lus10006411 locus=Lus10006411.g ID=Lus10006411.BGIv1.0 annot-version=v1.0 MEWNPKPNLQWDWENLIMYNDNNNPRKLDDDEEEEGADWEIAEEKGTPVIHAGSFSSKPSSTTSSQTQTPPKTTGYSTEPLLGLKLGKRTYFEDSSCVSN SSKVASGASVPVNAAASTMMKRSRSSSSGVPVYCQVEGCNLDLSGVKDYHRKHRVCESHSKCPKVVVAGLERRFCQQCSRFHSLFEFDEKKRSCRKRLSD HNARRRKPQGESLRFSPSRLHSSIYDERQRMSYGWDTRSPLVHGRPGNYLFWDDSSGSKFTITKECPSDIPTHHHHHLLGSQPASTQGVEVVESTVSLNP GGDDATQDLQRALSLLSTNSSSWGSCEQPSTITSLDTVHTTSAGFPQPLSGMPLQSVDAQMRSFTPSQADNSQHHQQVLKGPQYSAEFYHCQL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G43270	SBP	SPL2	squamosa promoter binding prot...		Lus10006411 [exp]	0	1
AT5G43270	SBP	SPL2	squamosa promoter binding prot...		Lus10011356 [exp]	4.5	0.8468
ATCG00160		ATCG00160.1, RP...	ribosomal protein S2 (.1)		Lus10013628 [exp]	5.7	0.8692
ATCG00180		ATCG00180.1, RP...	DNA-directed RNA polymerase fa...		Lus10009499 [exp]	6.9	0.8769
AT3G22960		PKP-ALPHA, PKP1	PLASTIDIAL PYRUVATE KINASE 1, ...		Lus10012446 [exp]	10.0	0.8305
AT1G80680		NUP96, SAR3, MO...	PRECOCIOUS, MODIFIER OF SNC1,3...		Lus10040555 [exp]	12.1	0.8678
ATCG00500		ATCG00500.1, AC...	acetyl-CoA carboxylase carboxy...		Lus10002473 [exp]	15.5	0.8619
ATCG00830		ATCG00830.1, RP...	ribosomal protein L2 (.1)		Lus10001687 [exp]	17.1	0.8597
AT5G44785		OSB3	organellar single-stranded DNA...		Lus10002722 [exp]	17.5	0.8156
AT5G02860			Pentatricopeptide repeat (PPR)...		Lus10002107 [exp]	17.7	0.8540
AT4G35440		CLCE, ATCLC-E, ...	chloride channel E (.1.2)		Lus10013858 [exp]	21.9	0.8228

Compare expression of checked genes

Lus10006411 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.