Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G67325 331 / 1e-113 Ran BP2/NZF zinc finger-like superfamily protein (.1.2) AT2G17975 50 / 7e-07 zinc finger (Ran-binding) family protein (.1) AT1G50300 45 / 5e-05 TAF15 TBP-associated factor 15 (.1) AT1G55040 44 / 0.0001 zinc finger (Ran-binding) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011357 [exp] 464 / 9e-163 AT1G67325 366 / 1e-124 Ran BP2/NZF zinc finger-like superfamily protein (.1.2) Lus10037029 [exp] 290 / 4e-97 AT1G67325 276 / 2e-92 Ran BP2/NZF zinc finger-like superfamily protein (.1.2) Lus10015776 [exp] 230 / 8e-75 AT1G67325 192 / 8e-61 Ran BP2/NZF zinc finger-like superfamily protein (.1.2) Lus10019433 [exp] 45 / 4e-05 AT2G26695 198 / 2e-65 Ran BP2/NZF zinc finger-like superfamily protein (.1) Lus10015180 [exp] 45 / 9e-05 AT1G55040 614 / 0.0 zinc finger (Ran-binding) family protein (.1) Lus10030555 [exp] 44 / 0.0001 AT1G50300 393 / 8e-135 TBP-associated factor 15 (.1) Lus10043289 [exp] 43 / 0.0001 AT2G26695 198 / 8e-66 Ran BP2/NZF zinc finger-like superfamily protein (.1) Lus10012902 [exp] 42 / 0.0004 AT1G50300 388 / 4e-134 TBP-associated factor 15 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G172500 [exp] 383 / 4e-133 AT1G67325 374 / 3e-130 Ran BP2/NZF zinc finger-like superfamily protein (.1.2) Potri.001G056000 [exp] 373 / 3e-130 AT1G67325 340 / 5e-118 Ran BP2/NZF zinc finger-like superfamily protein (.1.2) Potri.005G115100 [exp] 49 / 3e-06 AT2G17975 328 / 4e-113 zinc finger (Ran-binding) family protein (.1) Potri.015G038200 [exp] 44 / 0.0001 AT1G48570 335 / 4e-111 zinc finger (Ran-binding) family protein (.1) Potri.008G085400 [exp] 43 / 0.0002 AT1G50300 339 / 6e-115 TBP-associated factor 15 (.1) Potri.010G170700 [exp] 42 / 0.0004 AT1G50300 320 / 2e-107 TBP-associated factor 15 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0167 [flax] [poplar] Zn_Beta_Ribbon PF00641 [flax] [poplar] zf-RanBP Zn-finger in Ran binding protein and others
Representative CDS sequence Show only first row Show all	>Lus10006412 pacid=23171987 polypeptide=Lus10006412 locus=Lus10006412.g ID=Lus10006412.BGIv1.0 annot-version=v1.0 ATGGAGTCGATTTACGTGGATAATCGAAATTCCTCAGCTACCAAGCGTGCTAGAACTGATGGCAGTCGTAGAGAAGACGATTGGACCTGCCCAAGCTGTG GCAATGTCAACTTCTCTTTCCGGACGACTTGCAATATGCGTAACTGCACCCAACCTAGGCCAGCTGATCACAACTCGAAGTTTGCTGCCAAGCCATTGCA TCAGCTTCACAATTACTCCTCCCCAGCTCCCTATGTAGGCTCTGGTGCACCATCTTCCATATATATGGGTGTGCCCCCATATGGCTCTTCTGTGTTCAAC GCATCTTCTCTTCCTCCATATGAGGCACCGTTTTCGGGTGGTTCTGCTTATCCCTACAATTATGGTAGCCGAATCTCCACAGGAAGCCCTTATAATAGGC CTCCACTTCACATGTCTACTCCTCCACCATATTCTGGTGGATCTATGATGGGAAACGGTGGTATGTATGGAATGCCCCCCATGATGGACCGCTACGGGAT GGGCATGCCGATGGCCGCTGCTAATATGGGAGCGAGGCCGAGCTTTTACCCAGATGACAATGCTCAGAAGAACGATTCCACACGTGATAATGACTGGAAC TGTCCGAAATGTGGGAACGTTAACTTCTCATTCAGAACTTTTTGTAATATGCGCAAGTGCAATACACCAAAGCCAGGATCCCAGGCTGCCATGACTGACA AAAGTTCAAAACAAAACACACCGGAAGGAAGCTGGAAGTGTGAAAAATGCAACAACATTAATTATCCATTCCGAACGAAGTGTAATAGGCCGAACTGTGG AGCTGAGAAACCATCCCAGGCAACAAAGTCCACTTCACCGACTGCTGAAGAGAACGAGCAGGGGAAAGGTCGATTCCTGGGGATGACAATGCCTCTTTCT GACAACTTATCAGTGATTAATTTTGATGTCGAAGTATATCGGGCTATCGGCTTCTTCTTATCGTATTTCATGACCCGACGATTTAAGTGA
AA sequence Show only first row Show all	>Lus10006412 pacid=23171987 polypeptide=Lus10006412 locus=Lus10006412.g ID=Lus10006412.BGIv1.0 annot-version=v1.0 MESIYVDNRNSSATKRARTDGSRREDDWTCPSCGNVNFSFRTTCNMRNCTQPRPADHNSKFAAKPLHQLHNYSSPAPYVGSGAPSSIYMGVPPYGSSVFN ASSLPPYEAPFSGGSAYPYNYGSRISTGSPYNRPPLHMSTPPPYSGGSMMGNGGMYGMPPMMDRYGMGMPMAAANMGARPSFYPDDNAQKNDSTRDNDWN CPKCGNVNFSFRTFCNMRKCNTPKPGSQAAMTDKSSKQNTPEGSWKCEKCNNINYPFRTKCNRPNCGAEKPSQATKSTSPTAEENEQGKGRFLGMTMPLS DNLSVINFDVEVYRAIGFFLSYFMTRRFK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G67325			Ran BP2/NZF zinc finger-like s...		Lus10006412 [exp]	0	1
AT5G08570			Pyruvate kinase family protein...		Lus10041003 [exp]	3.5	0.9418
AT5G67320		HOS15	high expression of osmotically...		Lus10010384 [exp]	9.4	0.9065
AT4G10265			Wound-responsive family protei...		Lus10039755 [exp]	10.5	0.9332
AT5G38630		ACYB-1	cytochrome B561-1 (.1)		Lus10003076 [exp]	11.6	0.9273
AT5G39890			Protein of unknown function (D...		Lus10003861 [exp]	11.7	0.9418
AT4G10270			Wound-responsive family protei...		Lus10018530 [exp]	12.0	0.9385
AT1G28120			unknown protein		Lus10026630 [exp]	12.0	0.9373
AT4G10265			Wound-responsive family protei...		Lus10039751 [exp]	16.1	0.9320
AT3G04500			RNA-binding (RRM/RBD/RNP motif...		Lus10014659 [exp]	16.2	0.9219
AT1G03910			unknown protein		Lus10035558 [exp]	16.3	0.9214

Compare expression of checked genes

Lus10006412 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.