Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G67330 352 / 2e-122 Protein of unknown function (DUF579) (.1) AT1G27930 322 / 1e-110 Protein of unknown function (DUF579) (.1) AT1G71690 238 / 1e-77 Protein of unknown function (DUF579) (.1) AT1G09610 227 / 2e-73 Protein of unknown function (DUF579) (.1) AT1G33800 226 / 8e-73 Protein of unknown function (DUF579) (.1) AT4G09990 225 / 1e-72 Protein of unknown function (DUF579) (.1) AT2G15440 159 / 1e-46 Protein of unknown function (DUF579) (.1) AT5G67210 151 / 1e-43 IRX15-L IRX15-LIKE, Protein of unknown function (DUF579) (.1) AT3G50220 148 / 2e-42 IRX15 IRREGULAR XYLEM 15, Protein of unknown function (DUF579) (.1) AT4G24910 135 / 2e-37 Protein of unknown function (DUF579) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011360 [exp] 480 / 6e-173 AT1G67330 350 / 1e-121 Protein of unknown function (DUF579) (.1) Lus10037026 [exp] 448 / 1e-160 AT1G67330 382 / 1e-134 Protein of unknown function (DUF579) (.1) Lus10015780 [exp] 446 / 1e-159 AT1G67330 381 / 4e-134 Protein of unknown function (DUF579) (.1) Lus10012537 [exp] 303 / 2e-103 AT1G27930 313 / 2e-107 Protein of unknown function (DUF579) (.1) Lus10005822 [exp] 231 / 9e-75 AT4G09990 360 / 6e-126 Protein of unknown function (DUF579) (.1) Lus10005829 [exp] 231 / 1e-74 AT4G09990 360 / 8e-126 Protein of unknown function (DUF579) (.1) Lus10002954 [exp] 223 / 9e-72 AT4G09990 298 / 1e-101 Protein of unknown function (DUF579) (.1) Lus10002829 [exp] 160 / 4e-47 AT5G67210 296 / 5e-100 IRX15-LIKE, Protein of unknown function (DUF579) (.1) Lus10027879 [exp] 157 / 4e-46 AT5G67210 299 / 2e-101 IRX15-LIKE, Protein of unknown function (DUF579) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G172300 [exp] 378 / 9e-133 AT1G67330 369 / 1e-129 Protein of unknown function (DUF579) (.1) Potri.001G056300 [exp] 374 / 4e-131 AT1G67330 366 / 4e-128 Protein of unknown function (DUF579) (.1) Potri.013G102200 [exp] 231 / 9e-75 AT1G33800 362 / 3e-126 Protein of unknown function (DUF579) (.1) Potri.019G076300 [exp] 229 / 5e-74 AT1G09610 367 / 2e-128 Protein of unknown function (DUF579) (.1) Potri.004G226800 [exp] 226 / 7e-73 AT1G09610 424 / 4e-151 Protein of unknown function (DUF579) (.1) Potri.003G003801 [exp] 221 / 4e-71 AT1G09610 429 / 5e-153 Protein of unknown function (DUF579) (.1) Potri.009G098800 [exp] 180 / 1e-54 AT5G67210 293 / 2e-98 IRX15-LIKE, Protein of unknown function (DUF579) (.1) Potri.001G302600 [exp] 171 / 3e-51 AT5G67210 305 / 2e-103 IRX15-LIKE, Protein of unknown function (DUF579) (.1) Potri.015G096900 [exp] 167 / 1e-49 AT4G24910 248 / 6e-81 Protein of unknown function (DUF579) (.1) Potri.007G047000 [exp] 165 / 5e-49 AT5G67210 399 / 2e-140 IRX15-LIKE, Protein of unknown function (DUF579) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04669 [flax] [poplar] Polysacc_synt_4 Polysaccharide biosynthesis
Representative CDS sequence Show only first row Show all	>Lus10006415 pacid=23171974 polypeptide=Lus10006415 locus=Lus10006415.g ID=Lus10006415.BGIv1.0 annot-version=v1.0 ATGATGAAATCCAAAGCTCGCCTCCTACCAGAGAAATCATGGGTCCTCGCCTTAACGATGGCCGCGCTCGTCTTTGCCGGCGTACTAATCAGCAGTTTCA TCCGCTCAGCCGACACATCTTCCTTCCTCTGCTCCCTAGCCGGCGGTGGAGCCGCCGCCGCCGCCCCCAATAAATCCCTCTCTTCCTCCTCCTCCGACTC CATAGTAGCGCAGCTCAACGCAATCGTCCACTACGCAACATCACGAATCACACCGCAGCAGAACATCCACGAGATCTCAATCACGCTGAAAGTCCTCCTC GACAAGTCCCCCTGCAACTTCCTCGTCTTCGGCCTCGGATTCGATTCCCTGATGTGGAACTCGCTCAACCCGGGCGGAACGACCATCTTCCTCGAGGAGG ATCCGTCGTGGGTGAAATCAGTGCTGAAGGACGCGCCGTCACTCCACGCGCACACCGTCAAGTACAGGACGCAGCTCAAGGAGTCAGATCGGCTCCTGAA ATCGTACCGTAAGGAATCACTCTGCTCCCCTGCAAAAGCTTATCTGAAAGGCAATCTGAAATGCCCTCTGGCTTTAGCTACTTTGCCGGAGGAGATCTAT GAAAAGGAATGGGATCTAATCATGATCGACGCGCCTAGAGGGTATTTCCCCGAGGCGCCGGGAAGGATGGCGGCGATCTTCTCGGCGGCGGTTATGGCCA GGGCGAGGAAAGGGTCGGGTGTGACGCATGTGTTTCTTCATGACGTTGATCGGAAGGTGGAGAAGAGGTACGCGGAGGAGTTTCTGTGTAGGAAGTATTT GGTCAAGGGAGTTGGCCGGCTGTGGCATTTCGAGATCCCGGCGGCGGCGAATATGACCGGCGGACAAGATGAGACGTCGTGGTTCTGTTAG
AA sequence Show only first row Show all	>Lus10006415 pacid=23171974 polypeptide=Lus10006415 locus=Lus10006415.g ID=Lus10006415.BGIv1.0 annot-version=v1.0 MMKSKARLLPEKSWVLALTMAALVFAGVLISSFIRSADTSSFLCSLAGGGAAAAAPNKSLSSSSSDSIVAQLNAIVHYATSRITPQQNIHEISITLKVLL DKSPCNFLVFGLGFDSLMWNSLNPGGTTIFLEEDPSWVKSVLKDAPSLHAHTVKYRTQLKESDRLLKSYRKESLCSPAKAYLKGNLKCPLALATLPEEIY EKEWDLIMIDAPRGYFPEAPGRMAAIFSAAVMARARKGSGVTHVFLHDVDRKVEKRYAEEFLCRKYLVKGVGRLWHFEIPAAANMTGGQDETSWFC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G67330			Protein of unknown function (D...		Lus10006415 [exp]	0	1
AT4G02730		AtWDR5b	human WDR5 \(WD40 repeat\) hom...		Lus10014674 [exp]	1.0	0.8929
AT5G63450		CYP94B1	"cytochrome P450, family 94, s...		Lus10014742 [exp]	4.5	0.8799
AT2G18030			Peptide methionine sulfoxide r...		Lus10041922 [exp]	5.3	0.8746
AT1G64700			unknown protein		Lus10017341 [exp]	5.3	0.8830
AT4G11350			Protein of unknown function (D...		Lus10007923 [exp]	6.5	0.8417
AT3G06150			unknown protein		Lus10004424 [exp]	6.5	0.8835
AT1G58170			Disease resistance-responsive ...		Lus10026176 [exp]	6.9	0.8480
AT4G01200			Calcium-dependent lipid-bindin...		Lus10002155 [exp]	7.2	0.8591
AT4G29680			Alkaline-phosphatase-like fami...		Lus10032681 [exp]	9.9	0.8848
AT5G58900	MYB		Homeodomain-like transcription...		Lus10040696 [exp]	9.9	0.8298

Compare expression of checked genes

Lus10006415 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.