Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G67340 470 / 4e-166 HCP-like superfamily protein with MYND-type zinc finger (.1) AT5G50450 381 / 1e-131 HCP-like superfamily protein with MYND-type zinc finger (.1) AT1G74875 42 / 0.0003 unknown protein AT1G17110 43 / 0.0004 UBP15 ubiquitin-specific protease 15 (.1.2) AT2G24640 42 / 0.001 UBP19 ubiquitin-specific protease 19 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015784 [exp] 539 / 0 AT1G67340 474 / 5e-168 HCP-like superfamily protein with MYND-type zinc finger (.1) Lus10011362 [exp] 395 / 2e-137 AT1G67340 352 / 5e-121 HCP-like superfamily protein with MYND-type zinc finger (.1) Lus10037021 [exp] 360 / 4e-123 AT1G67340 291 / 8e-97 HCP-like superfamily protein with MYND-type zinc finger (.1) Lus10022147 [exp] 40 / 0.0007 AT1G67623 78 / 5e-18 F-box family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G056800 [exp] 536 / 0 AT1G67340 499 / 2e-177 HCP-like superfamily protein with MYND-type zinc finger (.1) Potri.003G171400 [exp] 528 / 0 AT1G67340 484 / 1e-171 HCP-like superfamily protein with MYND-type zinc finger (.1) Potri.015G096200 [exp] 446 / 4e-157 AT1G67340 438 / 3e-154 HCP-like superfamily protein with MYND-type zinc finger (.1) Potri.012G097600 [exp] 439 / 2e-154 AT1G67340 436 / 2e-153 HCP-like superfamily protein with MYND-type zinc finger (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF08238 [flax] [poplar] Sel1 Sel1 repeat CL0175 [flax] [poplar] TRASH PF01753 [flax] [poplar] zf-MYND MYND finger
Representative CDS sequence Show only first row Show all	>Lus10006418 pacid=23171949 polypeptide=Lus10006418 locus=Lus10006418.g ID=Lus10006418.BGIv1.0 annot-version=v1.0 ATGAAGACGAGGGGAGGCAGTTGTTACCGGAGAATGGATGTTTGCGTGGAGAAGAGAGTTCGGAAAATCGATTTCGCCGGAGGCGAACGAGAGATTCTCG CCGGGAAGAGGCGGAGGATCTCGCCGGAAGTGAAATCTGAAGGCGGCGAGTTTGATATGTTCGATTCTCTTCCGGATGATCTCGTACTGTCGATTCTCGC CAAGATTAGCTCCTCTGCCTCTTGCCCATCGGATTTCTTCAACGTATTGATAACATGTAAGAGATTCAACGGGTTAGGACTTAATCCGGTGGTGGTGTCA AAGGCTTCTCAGAACACATTTGCAATCAAGGCGAAGAGCTGGTCGGAGTCCGGTCACCGGTTTCTGAAGCTCTGCGCCGACGCAGGGAATGTTGAAGCCT GCTATACTCTCGGCATGATTCGGTTTTACTGTCTGCAAAATCGAGGCAGCGGAGCTTCGTTGATGGCGAAGGCGGCGATTAGCTCACACGCCCCTTCACT CTACTCGCTAGCTGTGATTCAGTTCAACGGCAGCGGCGGCACGAAGAGCGACAAGGATCTACGCGCCGGAGTAGCGCTGTGCGCACGGGCCGCCTTCCTC GGTCACATCGATGCCTTGAGGGAGCTAGGCCACTGCCTTCAGGACGGGTACGGCGTCCGCCAGAACATCGCCGAGGGACGGCGGTTCCTCGTCCAGGCCA ATGCAAGGGAGCTAGCGTCGGTGCTTTCGACTCCAACACGCGCCTGGCTCACTTGGAACAACCCCCACGCGCAGCCCAACAGCCAACTCCCAAGAATTGG ATGCGGCGGCGGAGCCACCGCTACGGGTCCAGTGGGATGTCCGCTGTTGAGCGATTTCGGGTGCAATGTCCCTGCGCCGGAGACTCACCCGGCGAGTAAG TTCATGTCGGAGTGGTTTTCTGACCGTTGCGGGTCACCGGGTCAGGGGCTCAGGCTGTGTTCTCACTTCGGGTGCGGCCGGCCGGAGACACGTAAGCACG AGTTTCGCAGGTGCTCTGTTTGCGGGACGGTAAACTACTGCTCCAGAGCTTGCCAGGCTTTGGATTGGAAGCTGAGGCATAAAGCAGAGTGCACTCCGGC GGAGAGGTGGGTGGAGGAAGACGGCGAGGGGATGGACATCGACGGCGTCGGTGACGGTAACGATAACGGAGTGGTGGATAGCTAG
AA sequence Show only first row Show all	>Lus10006418 pacid=23171949 polypeptide=Lus10006418 locus=Lus10006418.g ID=Lus10006418.BGIv1.0 annot-version=v1.0 MKTRGGSCYRRMDVCVEKRVRKIDFAGGEREILAGKRRRISPEVKSEGGEFDMFDSLPDDLVLSILAKISSSASCPSDFFNVLITCKRFNGLGLNPVVVS KASQNTFAIKAKSWSESGHRFLKLCADAGNVEACYTLGMIRFYCLQNRGSGASLMAKAAISSHAPSLYSLAVIQFNGSGGTKSDKDLRAGVALCARAAFL GHIDALRELGHCLQDGYGVRQNIAEGRRFLVQANARELASVLSTPTRAWLTWNNPHAQPNSQLPRIGCGGGATATGPVGCPLLSDFGCNVPAPETHPASK FMSEWFSDRCGSPGQGLRLCSHFGCGRPETRKHEFRRCSVCGTVNYCSRACQALDWKLRHKAECTPAERWVEEDGEGMDIDGVGDGNDNGVVDS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G67340			HCP-like superfamily protein w...		Lus10006418 [exp]	0	1
AT3G10760	GARP		Homeodomain-like superfamily p...		Lus10012102 [exp]	4.0	0.7789
AT5G16450			Ribonuclease E inhibitor RraA/...		Lus10020212 [exp]	12.6	0.6726
AT3G19990			unknown protein		Lus10017359 [exp]	14.0	0.7599
AT1G29040			unknown protein		Lus10000987 [exp]	69.2	0.6955
AT4G13830		J20	DNAJ-like 20 (.1.2)		Lus10002355 [exp]	118.8	0.6571

Compare expression of checked genes

Lus10006418 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.