Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G27080 164 / 2e-51 TOM20-3 translocase of outer membrane 20 kDa subunit 3 (.1) AT5G40930 153 / 4e-47 TOM20-4 translocase of outer membrane 20-4 (.1) AT1G27390 153 / 7e-47 TOM20-2 translocase outer membrane 20-2 (.1) AT3G27070 127 / 4e-37 TOM20-1 translocase outer membrane 20-1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011363 [exp] 342 / 3e-121 AT3G27080 180 / 1e-57 translocase of outer membrane 20 kDa subunit 3 (.1) Lus10012532 [exp] 161 / 7e-46 AT3G01910 616 / 0.0 sulfite oxidase (.1.2.3) Lus10035211 [exp] 143 / 1e-42 AT3G27080 210 / 1e-68 translocase of outer membrane 20 kDa subunit 3 (.1) Lus10032045 [exp] 140 / 1e-41 AT3G27080 211 / 2e-69 translocase of outer membrane 20 kDa subunit 3 (.1) Lus10041558 [exp] 68 / 3e-14 AT3G27080 83 / 5e-20 translocase of outer membrane 20 kDa subunit 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G330200 [exp] 177 / 1e-56 AT1G27390 215 / 3e-71 translocase outer membrane 20-2 (.1) Potri.001G054900 [exp] 174 / 2e-55 AT1G27390 230 / 4e-77 translocase outer membrane 20-2 (.1) Potri.003G173400 [exp] 174 / 2e-55 AT3G27080 208 / 2e-68 translocase of outer membrane 20 kDa subunit 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF06552 [flax] [poplar] TOM20_plant Plant specific mitochondrial import receptor subunit TOM20
Representative CDS sequence Show only first row Show all	>Lus10006419 pacid=23172009 polypeptide=Lus10006419 locus=Lus10006419.g ID=Lus10006419.BGIv1.0 annot-version=v1.0 ATGGAGTTCACTCAAGAAGACTTCGATCGCCTCCTGTTCATGGAGCACGCCCGACAGACGGCCGAATCCAGCTACGCCAAGGACCCTAAAAACGCCGATA ACTTGACCAAGTGGGGAGCAGCGTTGCTTCAGCTCTCTCAATTGGAGAAAGGCCCTGCCGCGGTCACTCAGATGCTTGATGAGGCGATGTTGAGATTCGA GGAGGCGTTGGGGATAAATCCACGGAAGCATGAAGCTTTATGGGGGATGGGGAACGCGAACACAAATTATGCGTTTTTATCTCCTGATCAAGCTGAAGCA GGACAACGATTTCATATGGCTGCTGAGTTTTATCAGCGAGCTCTTGACGAGGCTCCGGATAATCCGATATATCACCAGTCTTTGATGGAGGTTGCTAAGG CACCGGAGCTGCATCGTCAGGCTTTTGAGCAGATGGCTGCTGCTGCAACATCTAAGGGTTCGAAGAAGAAGAAGAGTAGGAAGACTGAGGATTTGATGTA TGACGTATGTGGCTGGGTTATACTTGCCGCCGGAGTTGCCGCCTTACTGTCAAAGTCCTATAATAACCCGCCGCCGCCTCCGTCTCCACATTTCTAA
AA sequence Show only first row Show all	>Lus10006419 pacid=23172009 polypeptide=Lus10006419 locus=Lus10006419.g ID=Lus10006419.BGIv1.0 annot-version=v1.0 MEFTQEDFDRLLFMEHARQTAESSYAKDPKNADNLTKWGAALLQLSQLEKGPAAVTQMLDEAMLRFEEALGINPRKHEALWGMGNANTNYAFLSPDQAEA GQRFHMAAEFYQRALDEAPDNPIYHQSLMEVAKAPELHRQAFEQMAAAATSKGSKKKKSRKTEDLMYDVCGWVILAAGVAALLSKSYNNPPPPPSPHF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G27080		TOM20-3	translocase of outer membrane ...		Lus10006419 [exp]	0	1
AT4G20020			unknown protein		Lus10035806 [exp]	4.5	0.8445
AT2G15000			unknown protein		Lus10025365 [exp]	5.1	0.8329
AT3G22330		ATRH53, PMH2	putative mitochondrial RNA hel...		Lus10035410 [exp]	6.9	0.8157
AT5G52630		MEF1	mitochondrial RNAediting facto...		Lus10011323 [exp]	8.8	0.8100
AT3G55605			Mitochondrial glycoprotein fam...		Lus10030157 [exp]	11.7	0.8105
AT5G62300			Ribosomal protein S10p/S20e fa...		Lus10031705 [exp]	12.7	0.7702
AT3G55605			Mitochondrial glycoprotein fam...		Lus10001015 [exp]	13.0	0.8038
AT2G21060		ATCSP4, ATGRP2B	COLD SHOCK DOMAIN PROTEIN 4, g...		Lus10027839 [exp]	15.0	0.8102
AT3G55605			Mitochondrial glycoprotein fam...		Lus10001017 [exp]	15.9	0.8076
AT4G31580		SRZ22, RSZP22, ...	RS-containing zinc finger prot...		Lus10012994 [exp]	18.0	0.7712

Compare expression of checked genes

Lus10006419 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.