Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G28490 443 / 2e-152 RmlC-like cupins superfamily protein (.1) AT2G18540 176 / 5e-48 RmlC-like cupins superfamily protein (.1) AT4G36700 127 / 8e-32 RmlC-like cupins superfamily protein (.1) AT1G07750 54 / 9e-08 RmlC-like cupins superfamily protein (.1) AT2G28680 52 / 3e-07 RmlC-like cupins superfamily protein (.1) AT3G22640 50 / 2e-06 PAP85 cupin family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011364 [exp] 732 / 0 AT2G28490 466 / 2e-161 RmlC-like cupins superfamily protein (.1) Lus10041722 [exp] 189 / 9e-53 AT2G18540 401 / 2e-132 RmlC-like cupins superfamily protein (.1) Lus10037937 [exp] 187 / 7e-52 AT2G18540 400 / 2e-131 RmlC-like cupins superfamily protein (.1) Lus10042617 [exp] 72 / 3e-13 AT3G22640 202 / 2e-58 cupin family protein (.1) Lus10022070 [exp] 64 / 1e-10 AT3G22640 205 / 8e-60 cupin family protein (.1) Lus10040867 [exp] 61 / 9e-10 AT2G28680 517 / 0.0 RmlC-like cupins superfamily protein (.1) Lus10015219 [exp] 60 / 2e-09 AT1G07750 568 / 0.0 RmlC-like cupins superfamily protein (.1) Lus10005880 [exp] 59 / 3e-09 AT2G28680 518 / 0.0 RmlC-like cupins superfamily protein (.1) Lus10005438 [exp] 58 / 7e-09 AT1G07750 569 / 0.0 RmlC-like cupins superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G054700 [exp] 478 / 1e-166 AT2G28490 522 / 0.0 RmlC-like cupins superfamily protein (.1) Potri.007G029100 [exp] 179 / 2e-49 AT2G18540 391 / 2e-126 RmlC-like cupins superfamily protein (.1) Potri.001G259208 [exp] 126 / 2e-33 AT2G28490 0 / 1 RmlC-like cupins superfamily protein (.1) Potri.005G212266 [exp] 74 / 3e-14 AT3G22640 128 / 2e-33 cupin family protein (.1) Potri.006G002500 [exp] 60 / 2e-09 AT3G22640 174 / 7e-49 cupin family protein (.1) Potri.008G102900 [exp] 54 / 1e-07 AT2G28680 543 / 0.0 RmlC-like cupins superfamily protein (.1) Potri.007G047200 [exp] 53 / 3e-07 AT2G28680 561 / 0.0 RmlC-like cupins superfamily protein (.1) Potri.001G308050 [exp] 47 / 3e-05 AT5G44120 392 / 1e-132 CRUCIFERINA, RmlC-like cupins superfamily protein (.1.2.3) Potri.001G402600 [exp] 46 / 3e-05 AT1G07750 330 / 6e-112 RmlC-like cupins superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [flax] [poplar] Cupin PF00190 [flax] [poplar] Cupin_1 Cupin
Representative CDS sequence Show only first row Show all	>Lus10006420 pacid=23172013 polypeptide=Lus10006420 locus=Lus10006420.g ID=Lus10006420.BGIv1.0 annot-version=v1.0 ATGAGTCACCGAAACGGCGTCCTTCTTGTGGTGATCATGCTCTCCCTTACGGTAGCCACAATGGGGACGACAGCCGCAGGGGATGATGATGATGACCGGT TCCTACTCCAGCACTCGGAGCCGGTGATCCAGACCGAAGCAGGGGAAATGCGTGTCGTGCTGAGGAACAACTTCGGCGGTGGCGGCGGAAGAGCACGTCC GACAGCAATTGGTGGGAAGCCATTGCACATTGGGTTTCTTACGATGGAGCCGAAATCGCTGTTGATACCGCAGTATCTCGATTCGGGGCTGTTGATCTTC GTGCGGAGAGGGGAGGCGAAGCTAGGGTTGATTTACGAAGACGAGCTGGCGGAGAGGCGTTTGAAGACTGGGGATGTGTATTGGATCCCGCCCGGTTCGG TTTTTTACTTGGTTAATACTGGGGAAGGCCAGCGGCTGAATGTTATTTGTGCTATTGATCCCTCAGAGGGTCTCGGTTCGACCACTTTCCAGTCTTTCTT CATCGGAGGTGGCACTAATCCAACTTCAATCCTAGCTGGTTTTGATCCGGACACACTTGCAACCGCCTTCAATGTGACGATCGGGGAGCTCAGAGAGGTT ATGTCCGCACAACGAGACGGCCCAATAGTCTTCATCGACGATGGCTCTCTATCCCCTGACCAAAGAAGACAAAGAACGAGATCGGTTTGGTCAGAGTTCC TCCAACTCAAACACCACGACCGTCTGCGCCACCTCAAGCAAATGTTCGATTTCACAAACGAGGAAGAAAAAGAAGCAGCATCATCATCATCATGGAGGAA AATCCTCTCCTTCTTCAGAAGAAGGGGGGACTGGGGGAGAAGCAGCTCGAGAACAGGGAGATCGCCCGATTCGTACAATTTGTACGACAAAAAAGCCGAT TTCAGCAATGCCTACGGATGGAGCATAGCACTCGACGATGACGACTATTCGCCACTCAAGCAATCGGGAATCGGAGTCTTCCTAGTCAACCTAACCGCGG GGTCAATGATGGCGCCGCACGTTAACCCGACCGCCGCAGAATACGGCGTCGTTTTAAACGGCGCTGGGAGCGTGGAGATCGTGTACCCAAACGGGACGCA GGCGATTAAAGCCGAGGTAGCGGAGGGTGACGTGTTCTTGGTGCCAAGGTACTTCCCGTTCAGCCAGATGGCGTCGAGGACTGGGCCCATGCAGTTCTTT GGGTTCACGACTTCAGCCCGTAAGAACAGGCCTCAGTTTTTGGTGGGCCGGAGCTCGGTCTTGGAGACAATGAAGGGTGCTGAGCTGGCCGCTGGGTTCG GAATGGCCGGTGATGAGCCACGGTTTAGGGGGATCGTCGAGGCTCAACGGGAGTCGGTTATACTTCCGTCGGCGAGCGCATCACCGCCGTATGCTGCAGG GGAGGATTAG
AA sequence Show only first row Show all	>Lus10006420 pacid=23172013 polypeptide=Lus10006420 locus=Lus10006420.g ID=Lus10006420.BGIv1.0 annot-version=v1.0 MSHRNGVLLVVIMLSLTVATMGTTAAGDDDDDRFLLQHSEPVIQTEAGEMRVVLRNNFGGGGGRARPTAIGGKPLHIGFLTMEPKSLLIPQYLDSGLLIF VRRGEAKLGLIYEDELAERRLKTGDVYWIPPGSVFYLVNTGEGQRLNVICAIDPSEGLGSTTFQSFFIGGGTNPTSILAGFDPDTLATAFNVTIGELREV MSAQRDGPIVFIDDGSLSPDQRRQRTRSVWSEFLQLKHHDRLRHLKQMFDFTNEEEKEAASSSSWRKILSFFRRRGDWGRSSSRTGRSPDSYNLYDKKAD FSNAYGWSIALDDDDYSPLKQSGIGVFLVNLTAGSMMAPHVNPTAAEYGVVLNGAGSVEIVYPNGTQAIKAEVAEGDVFLVPRYFPFSQMASRTGPMQFF GFTTSARKNRPQFLVGRSSVLETMKGAELAAGFGMAGDEPRFRGIVEAQRESVILPSASASPPYAAGED

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G28490			RmlC-like cupins superfamily p...		Lus10006420 [exp]	0	1
AT2G04220			Plant protein of unknown funct...		Lus10032896 [exp]	14.4	0.6871
AT2G01050			zinc ion binding;nucleic acid ...		Lus10032865 [exp]	14.8	0.6013
AT1G05660			Pectin lyase-like superfamily ...		Lus10010584 [exp]	15.5	0.5964
AT5G51280			DEAD-box protein abstrakt, put...		Lus10012899 [exp]	16.9	0.6094
					Lus10039450 [exp]	18.6	0.6763
AT5G45840			Leucine-rich repeat protein ki...		Lus10029228 [exp]	22.1	0.5678
AT1G07060			unknown protein		Lus10031856 [exp]	51.1	0.4361
AT2G19330		PIRL6	plant intracellular ras group-...		Lus10035622 [exp]	72.7	0.5460
AT1G69550			disease resistance protein (TI...		Lus10015649 [exp]	78.5	0.5222
					Lus10029489 [exp]	98.1	0.4681

Compare expression of checked genes

Lus10006420 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.