Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G27400 286 / 3e-100 Ribosomal protein L22p/L17e family protein (.1) AT1G67430 285 / 1e-99 Ribosomal protein L22p/L17e family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015792 [exp] 312 / 1e-101 AT1G67420 511 / 2e-168 Zn-dependent exopeptidases superfamily protein (.1.2) Lus10037015 [exp] 310 / 5e-100 AT1G67420 1104 / 0.0 Zn-dependent exopeptidases superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G096600 [exp] 304 / 4e-107 AT1G27400 321 / 4e-114 Ribosomal protein L22p/L17e family protein (.1) Potri.015G094400 [exp] 296 / 6e-104 AT1G67430 324 / 4e-115 Ribosomal protein L22p/L17e family protein (.1.2) Potri.010G060400 [exp] 293 / 1e-102 AT1G67430 299 / 3e-105 Ribosomal protein L22p/L17e family protein (.1.2) Potri.008G175500 [exp] 285 / 1e-99 AT1G67430 285 / 1e-99 Ribosomal protein L22p/L17e family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00237 [flax] [poplar] Ribosomal_L22 Ribosomal protein L22p/L17e
Representative CDS sequence Show only first row Show all	>Lus10006421 pacid=23171968 polypeptide=Lus10006421 locus=Lus10006421.g ID=Lus10006421.BGIv1.0 annot-version=v1.0 ATGGTGAAGTACTCGCAGGAGCCGGTGAACCCTACCAAGTCATGCAAGGCTAGGGGCTCTGATCTCAGAGTTCACTTCAAGAATACTAGGGAAACAGCGT TCTCCATCAGGAAGATGGCTTTGGTAAAGGCCAAAGCATACCTGGAGGATGTCCTTGCTCACAAGCAGGCCATTCCTTTCAGGAGATTCTGCCGTGGAGT CGGTAGAACTGCTCAGGCAAAGAATGCTGGGCACCCAAATGGTCAGGCTCGCTGGCCCGCAAAGTCTGCTAAGTTCATCCTTGACCTGTTGAAGAACGCT GAGAGCAATGCTGAAGTTAAAGGATTGGATGTCGATGCTCTTTTCATCTCCCATATCCAGGTGAACCAGGCTCAGAAGCAAAGGCGTCGTACTTACCGTG CCCATGGAAGGATCAACCCTTACATGTCCAACCCTTGCCATATCGAGTTGACCCTATCCGAGAAGGAAGAGCCCGTCAAGAAGGAGCCGGAGACACAGCT TGCTGCCAGTGGCAAATCCAGGAAGGGTCAAGCTTTGAGAAGCGGTGCATCTTCTTAG
AA sequence Show only first row Show all	>Lus10006421 pacid=23171968 polypeptide=Lus10006421 locus=Lus10006421.g ID=Lus10006421.BGIv1.0 annot-version=v1.0 MVKYSQEPVNPTKSCKARGSDLRVHFKNTRETAFSIRKMALVKAKAYLEDVLAHKQAIPFRRFCRGVGRTAQAKNAGHPNGQARWPAKSAKFILDLLKNA ESNAEVKGLDVDALFISHIQVNQAQKQRRRTYRAHGRINPYMSNPCHIELTLSEKEEPVKKEPETQLAASGKSRKGQALRSGASS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G67430			Ribosomal protein L22p/L17e fa...		Lus10006421 [exp]	0	1
AT5G23740		RPS11-BETA	ribosomal protein S11-beta (.1...		Lus10030113 [exp]	1.0	0.9877
AT2G34480			Ribosomal protein L18ae/LX fam...		Lus10023454 [exp]	1.4	0.9830
AT2G20450			Ribosomal protein L14 (.1)		Lus10011807 [exp]	3.5	0.9708
AT3G11940		AML1, ATRPS5A	ARABIDOPSIS MINUTE-LIKE 1, rib...		Lus10008436 [exp]	3.9	0.9784
AT4G16720			Ribosomal protein L23/L15e fam...		Lus10007805 [exp]	4.5	0.9766
AT3G25520		PGY3, ATL5, OLI...	RIBOSOMAL PROTEIN L5 A, PIGGYB...		Lus10004874 [exp]	4.5	0.9679
AT1G09590			Translation protein SH3-like f...		Lus10030607 [exp]	5.0	0.9719
AT3G62870			Ribosomal protein L7Ae/L30e/S1...		Lus10015841 [exp]	6.3	0.9685
AT2G36620		RPL24A	ribosomal protein L24 (.1)		Lus10035584 [exp]	6.5	0.9647
AT1G48830			Ribosomal protein S7e family p...		Lus10023638 [exp]	6.7	0.9638

Compare expression of checked genes

Lus10006421 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.