Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011366 [exp] 262 / 1e-89 AT3G27210 39 / 0.001 unknown protein
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10006423 pacid=23171988 polypeptide=Lus10006423 locus=Lus10006423.g ID=Lus10006423.BGIv1.0 annot-version=v1.0 ATGGCAACAAAGAACGAAACAGACGGCCGGAAAAACTGCCGCCAACTTCAGTCATCGCCGTCAACTCCAGTTACCGGCGGCGGCCGGCAAGCAGAAAGCT ACTTCGATACCCATCCTTGTTTTGATTCTGATGGCGAGGAGTTCCACAGTGTTAATGGAGGTAAATGGAAATTTCCGATCATCATGGACGACCGGGTTCC CTCGAAAGTCGAGCAAGAGCCGCAACCGGTTCAACCTCCGATCAGCACATGGAATCCAAACGAACGACGGAAAACTACAACTTCAAGGTCTTCATCAAGC GTGAAGAAGCGACTGTCTGATTTCTTCAGCGAGAGCTTCAACCGCGATCTGGAGATCGAGATCGAATCCGAACGAGCACAACAACAACATCCTTCATCAA GTTACGTCGATAACTACTCCCCTTCGACTAGCACCGATCGGACTAGTAGTAGTCCACAAGATCAGGCAGTGTCGAAACAGGTGTTCAGCGACCATGAAAT GGCGACCGGGAAGAAGAAATCGATGGTTAAACGAGCTTGCATTCCATCGTTGATGCGTAGCCTCAGCTGCGGTGGTGGCACGAGGAAGCGAACGCCGAGC TCCAGGGTTTAA
AA sequence Show only first row Show all	>Lus10006423 pacid=23171988 polypeptide=Lus10006423 locus=Lus10006423.g ID=Lus10006423.BGIv1.0 annot-version=v1.0 MATKNETDGRKNCRQLQSSPSTPVTGGGRQAESYFDTHPCFDSDGEEFHSVNGGKWKFPIIMDDRVPSKVEQEPQPVQPPISTWNPNERRKTTTSRSSSS VKKRLSDFFSESFNRDLEIEIESERAQQQHPSSSYVDNYSPSTSTDRTSSSPQDQAVSKQVFSDHEMATGKKKSMVKRACIPSLMRSLSCGGGTRKRTPS SRV

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10006423 [exp]	0	1
AT3G21550		AtDMP2	Arabidopsis thaliana DUF679 do...		Lus10041247 [exp]	1.4	0.9791
AT5G03260		LAC11	laccase 11 (.1)		Lus10002227 [exp]	2.4	0.9803
AT5G03260		LAC11	laccase 11 (.1)		Lus10023189 [exp]	4.2	0.9786
AT1G70500			Pectin lyase-like superfamily ...		Lus10030888 [exp]	4.9	0.9772
AT2G35930		PUB23	plant U-box 23 (.1)		Lus10021267 [exp]	5.5	0.9684
AT5G04200		AtMCP2f, ATMC9	metacaspase 2f, metacaspase 9 ...		Lus10012106 [exp]	6.2	0.9658
AT4G32810		MAX4, CCD8, ATC...	MORE AXILLARY BRANCHING 4, car...		Lus10001599 [exp]	6.9	0.9604
AT4G18550		AtDSEL	Arabidopsis thaliana DAD1-like...		Lus10013932 [exp]	7.3	0.9700
AT3G10410		CPY, SCPL49	CARBOXYPEPTIDASE Y, SERINE CAR...		Lus10037381 [exp]	8.7	0.9740
AT1G63120		ATRBL2	RHOMBOID-like 2 (.1)		Lus10017840 [exp]	8.8	0.9586

Compare expression of checked genes

Lus10006423 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.