Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G00620 525 / 0 EMB3127 EMBRYO DEFECTIVE 3127, Amino acid dehydrogenase family protein (.1) AT4G00600 414 / 1e-145 Amino acid dehydrogenase family protein (.1) AT2G38660 409 / 4e-143 Amino acid dehydrogenase family protein (.1.2.3.4) AT3G12290 394 / 9e-138 Amino acid dehydrogenase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011368 [exp] 672 / 0 AT4G00620 523 / 0.0 EMBRYO DEFECTIVE 3127, Amino acid dehydrogenase family protein (.1) Lus10022670 [exp] 602 / 0 AT4G00620 527 / 0.0 EMBRYO DEFECTIVE 3127, Amino acid dehydrogenase family protein (.1) Lus10018843 [exp] 517 / 0 AT4G00620 489 / 1e-175 EMBRYO DEFECTIVE 3127, Amino acid dehydrogenase family protein (.1) Lus10017822 [exp] 516 / 0 AT4G00620 488 / 4e-175 EMBRYO DEFECTIVE 3127, Amino acid dehydrogenase family protein (.1) Lus10012502 [exp] 490 / 5e-171 AT4G00620 442 / 6e-152 EMBRYO DEFECTIVE 3127, Amino acid dehydrogenase family protein (.1) Lus10034187 [exp] 414 / 1e-144 AT2G38660 473 / 5e-168 Amino acid dehydrogenase family protein (.1.2.3.4) Lus10043398 [exp] 409 / 8e-143 AT2G38660 469 / 2e-166 Amino acid dehydrogenase family protein (.1.2.3.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G157100 [exp] 535 / 0 AT4G00620 545 / 0.0 EMBRYO DEFECTIVE 3127, Amino acid dehydrogenase family protein (.1) Potri.006G114100 [exp] 431 / 1e-151 AT2G38660 456 / 2e-161 Amino acid dehydrogenase family protein (.1.2.3.4) Potri.011G098600 [exp] 395 / 2e-138 AT3G12290 473 / 3e-170 Amino acid dehydrogenase family protein (.1) Potri.014G080701 [exp] 103 / 2e-27 AT4G00620 101 / 1e-27 EMBRYO DEFECTIVE 3127, Amino acid dehydrogenase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0603 [flax] [poplar] AA_dh_N PF00763 [flax] [poplar] THF_DHG_CYH Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain CL0063 [flax] [poplar] NADP_Rossmann PF02882 [flax] [poplar] THF_DHG_CYH_C Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain
Representative CDS sequence Show only first row Show all	>Lus10006425 pacid=23171984 polypeptide=Lus10006425 locus=Lus10006425.g ID=Lus10006425.BGIv1.0 annot-version=v1.0 ATGAACTTCATCACCGATTGTTCTTCACTCTCAGCAACGGCTCGTCTCTTCCCCTTTGGCTCTACCAGTGCCGCCGTCTACCTCCGCCGTATCGGCCGCT GCTCCCTTCCCGGTCATCTCAAATCCCGCAGCCTCCGTTCTTCTTCTTCAGTTCCCCTAACTGTAAACGCAATGGCCAGCTCAACTTCAGCTACGGTGAT CGACGGGAAATTAACGGCGAAGGAAATCAGGGAGGAGATAGCAGGTGAAGTATCGAGAATGAAGGACGCGATCGGCGTAATCCCTGGGCTAGCAGTCATG CTCGTCGGAGACAGAAAAGACTCGGCAACTTACGTACGGAACAAGAAGAAAGCTTGTGAATCAGTAGGGATCAACTCTTTCGAAGTTTGCCTCCCGGAGG ATTCTTCCGAAACTGAAGTCCTCAAGTTCATCTCTGACTTCAATGGTGACCCTGCAGTCCATGGCATCCTTGTCCAGCTGCCCTTACCAAAGCATATGAA CGAACAGAACATTTTGAATGCTGTTAGCATAGAGAAAGACGTTGATGGTTTCCACCCCTTGAATATTGGACGTCTTGCTATGCGTGGAAGGGATCCTTTG TTCGTACCGTGTACCCCGAAAGGCTGTATCGAGTTGTTGCATAGGTATGGTGTTCAAATCAAAGGGAAGAGAGCTGTTGTGATTGGTAGGAGCAATATCG TAGGAATGCCAGCTGCTCTACTGCTCCAGAGGGAGGATGCTACTGTAACGATCGTGCACTCCAAGACCGGCAATCCGGAACAGATAGTGAAAGAAGCGGA TATAGTGATCTCTGCTGTTGGCCAACCTAACATGGTGAGAGGGAGCTGGCTAAAGCCTGGAGCTGTTGTCATTGATGTCGGCATCAACCCAGTCGAGGAT GCAACGTGTCCTCGAGGTTACAGATTGGTCGGGGATGTATGCTACGAGGAGGCTAGCAGAGTCGCTTCAGCTGTTACTCCGGTACCTGGAGGAGTCGGTC CGATGACCATAGCAATGCTTCTTTCCAATACCCTCACCTCGGCAAAGAGAATACACAGCTTTCAGTGA
AA sequence Show only first row Show all	>Lus10006425 pacid=23171984 polypeptide=Lus10006425 locus=Lus10006425.g ID=Lus10006425.BGIv1.0 annot-version=v1.0 MNFITDCSSLSATARLFPFGSTSAAVYLRRIGRCSLPGHLKSRSLRSSSSVPLTVNAMASSTSATVIDGKLTAKEIREEIAGEVSRMKDAIGVIPGLAVM LVGDRKDSATYVRNKKKACESVGINSFEVCLPEDSSETEVLKFISDFNGDPAVHGILVQLPLPKHMNEQNILNAVSIEKDVDGFHPLNIGRLAMRGRDPL FVPCTPKGCIELLHRYGVQIKGKRAVVIGRSNIVGMPAALLLQREDATVTIVHSKTGNPEQIVKEADIVISAVGQPNMVRGSWLKPGAVVIDVGINPVED ATCPRGYRLVGDVCYEEASRVASAVTPVPGGVGPMTIAMLLSNTLTSAKRIHSFQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G00620		EMB3127	EMBRYO DEFECTIVE 3127, Amino a...		Lus10006425 [exp]	0	1
AT5G37820		NIP4;2, NLM5	NODULIN- 26-LIKE MAJOR INTRINS...		Lus10028520 [exp]	8.1	0.6978
AT1G71080			RNA polymerase II transcriptio...		Lus10042948 [exp]	8.2	0.7108
AT2G39170			unknown protein		Lus10040608 [exp]	9.4	0.7291
AT4G15820			unknown protein		Lus10034169 [exp]	15.2	0.7014
AT3G14900		EMB3120	EMBRYO DEFECTIVE 3120, unknown...		Lus10039570 [exp]	16.2	0.6953
AT5G46920			Intron maturase, type II famil...		Lus10003019 [exp]	21.2	0.6968
AT1G07740			Tetratricopeptide repeat (TPR)...		Lus10005876 [exp]	24.3	0.6855
AT2G42770			Peroxisomal membrane 22 kDa (M...		Lus10001421 [exp]	27.1	0.6983
AT1G64810		APO1	ACCUMULATION OF PHOTOSYSTEM ON...		Lus10039122 [exp]	28.1	0.7067
AT1G22950			2-oxoglutarate (2OG) and Fe(II...		Lus10000171 [exp]	28.6	0.6776

Compare expression of checked genes

Lus10006425 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.